Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0515 ATGAGTGTTGTGGGGTTTTCTTGTTCTTCTTTTGTTGTGCTTATTGCTGTTTTGGCTCTGGTTTTGAATGGAGTGGAGGTTTGTTATGGAGGTAAAACAAGCCAGTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTAGACAGTGATGTTTTTGCTGTTCCTCCTGGTTATAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATAAAGTATTGTATTGGAGTGAGAAAAGCAAGCAAAAGAAACAGACCTTTGGGAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCACTGCACCATTGAAAACTTAAAGTACAACACCAAATACTACTATGAAGTGGGAATTGGGTACTCTCCAAGAACATTCTGGTTCGTCACTCCTCCAGAAGTCGGTCCCGATGTCCCCTATACATTTGGTCTCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATATAACGCTGACACATTACGAACGAAACCCGCACAAAGGAAAAACAGTGTTATTTGTAGGGGATCTATCTTATGCTGATAATTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTTGCTGAGAGAAGTGTCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGCGAGACCGAGCCTTTCAAGCCGTTTTCTAACCGATATCATGTCCCTTATAAAGCATCCGAGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTTGAAGCGGAGCTACCAAAAGTTAACAGAAGCGAAACACCATGGTTGATTGTTCTTATGCATTCACCATGGTACAACAGCTACAACTATCATTACATGGAAGGAGAAACTATGCGAGTGATGTATGAGCCATGGTTTGTACAATACAAAGTTGACGTTGTCTTTGCTGGCCATGTCCATGCTTACGAAAGATCTGAAAGAATTTCAAATATTGCATACAACATTGTGAATGGCCACTGTATTCCAGTAAAAGATCAATCTGCACCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAGCCTGCGTACTCGGCGTATCGTGAAGCGAGCTTTGGCCATGGCATATTCGATATAAAGAACAGAACTCATGCATATTTCAGTTGGAACAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCTTTGGTTCTTCAACAGACACTGGTACCCGGTCGATGAGTCGTTAAGTGAGCGGAAATGA 1416 41.67 MSVVGFSCSSFVVLIAVLALVLNGVEVCYGGKTSQFLRKVEKTVDMPLDSDVFAVPPGYNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNKVLYWSEKSKQKKQTFGKVYTYKFYNYTSGYIHHCTIENLKYNTKYYYEVGIGYSPRTFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNITLTHYERNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFAERSVAYQPWIWTAGNHEIDFVPEIGETEPFKPFSNRYHVPYKASESTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYEPWFVQYKVDVVFAGHVHAYERSERISNIAYNIVNGHCIPVKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHGIFDIKNRTHAYFSWNRNQDGYAVEADTLWFFNRHWYPVDESLSERK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4794956 4797995 + CcPI632755_02g005150.1 Cco02g0515 171272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0515 471 ProSiteProfiles Fibronectin type-III domain profile. 61 156 IPR003961 GO:0005515(InterPro)
Cco02g0515 471 PANTHER ACID PHOSPHATASE RELATED 12 458 IPR039331 GO:0003993(InterPro)
Cco02g0515 471 Pfam Purple acid Phosphatase, N-terminal domain 62 151 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco02g0515 471 SUPERFAMILY Purple acid phosphatase, N-terminal domain 43 155 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco02g0515 471 SUPERFAMILY Metallo-dependent phosphatases 159 465 IPR029052 -
Cco02g0515 471 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 61 157 - -
Cco02g0515 471 CDD MPP_PAPs 159 457 IPR041792 -
Cco02g0515 471 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 158 466 - -
Cco02g0515 471 Pfam Iron/zinc purple acid phosphatase-like protein C 388 445 IPR025733 -
Cco02g0515 471 Gene3D - 61 157 - -
Cco02g0515 471 Gene3D - 158 467 IPR029052 -
Cco02g0515 471 Pfam Calcineurin-like phosphoesterase 164 362 IPR004843 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0515 K22390 - - csv:101211612 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0515 Cco-Chr2:4794956 Cco04g1762 Cco-Chr4:32597385 1.40E-189 dispersed
Cco02g0515 Cco-Chr2:4794956 Cco08g1650 Cco-Chr8:27987999 1.20E-201 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97