Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0517 ATGGGGAAGAACAAGAAACGTAAGGACGGCGGCGAGAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAGGTCTTCGTCAAGAACTTGCCGTACTCGTTCACCAACTCAAAGCTTGAAGAAACATTCAGTGATGTTGGTCCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTTCAACTGAGCATCGAGGTTTTGGATTCGTGCAGTTTGCTGTAGCTGAAGATGCAAATCGAGCAATTGAGCTGAAGAATGGGATGTCTGTTGAAGGACGCAAAATTACTGTTAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCTAAAGAAAATCAAGCTACTGCATCTAAGTCAACAATTAACGAGGAAGGAGATACTTCTAAAAGGGAAGAGCAAACAATTAACGAGGACAGAGATACTTCTAAAAGGGAAGAACAAACAACTAACGAGGATAGAGATACTTCTGAAAAGGCAGAACAAACAACTTCAAATTCCGAGGGGAAAGAGAGACATTTGAATGCTCGGGAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAGAGGGTCATTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTATTCGGTGGTCTTCTTAATGCTGACATGGCTGAAGATGTTCACTGCCAAGCAAGAGATGTTGGCGACATATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTGAAGTCTGCACGTGCTGCTGTTACCATATTACACCAGAAACAGATGAAAGGAGGTGTTGTATGGGCCCGACAACTGGGTGGAGAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGATGTGATGATGCCACATAGTTCAGACACAGGATTATCAAAGGGGTTTGCGTTTGTCAAATTTACATGCAAACAGGATGCTGAGAGTGCTATTAAGAAGTTCAATGGTCAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGCTCGGGTGCTAGTGCTCCAGTTGATTCAGATGACGGGGAACAGACTGAAAGAGACAGAGAAGGTAGCATTAGTAGTGATGATTTCGAAGCTGAAAATACTGCTGTTCATGAGAAATCTCAGTGCTCCAACAAAGATGAAAGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCAGAGGTTAATTTTGAAGGAGAAGCAGAAATGGCAAGAAAAGTTCTTGAAAATCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTTCCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGATTTTGATTCGTCCAAGAAGTCATCTGATGTGTCTGATAAAGTATCAAATGAACCTGGAAAGTTAAATGAAAGCAAAACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACTGTTTATATAGGGAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTGCTATCCTTTGTGCCAGTCCTTCATCAGGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACGGTCAATGCTGCTACTGCTGCTGTTTCTTCTGCAAATGTTGCATCTGGTGTGGGAATATTTCTGAGAGGCAGGCAACTGAAAGTATTGAATGCCCTGGATAGAAAATCAGCTCATGACAAGGAATTGGAAAAGTCCAAAAATGACAATCATGACCACCGGAATCTTTATCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGAGTTTCTGCTAGTGATATGGAGAAACGTCAAAGGCTGGAAAAGAAAAGAACGACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAAGAACTTCAAAAACTTTGCATTGAAGCGGTTACCTCACGAGCTACAAAACAAAAACCCGTGATTCGACAGATTAAGTTCTTAAAGGATGTGAAGAAAGGAAAGCTACTGACAAAAAATCACTCGTGTGGAGTCGCTTTCGTTGAGTTTTCTGAGCATGAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACGTTTGGCCCTATAAATCGCCCGATCGTAGAGTTCGCTATTGACAATGTTCAAACGTTGAAGTTGCGTAAAGCAAAGTTACAAGCTTGGTCACAGGACAATACAGCCAATGTTCCTAAAGCCTGGCAACGGAATGTGAATACTGATACAATTGCTGGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATGGGCGATAATCGTCCGGTGCGCAACAAAGATGAAAATGACAATCATGTGTCCAATGATGTGGCGATGGAAGAAAATAGAGCTATAAAAAAGAGGAAAACACATCCAGAAATCGGTAATACAAACAAGTTGCTGAGACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAACAGATCGGTATCCATGGATTCTGGAAAGATAAAAGCTTCTCAGGAAGCTGATGTACAACACAAAAAGAAGGTAAAACATCAAGTAGAGCAGCAGAGGAAGAGGCCAAAGAAAAACAAGGAACCAATAGGGCGGGATGTTGTCGATAAACTGGACGTGCTTATTGAACAATATCGATCCAAGTTTTTGCAGCAGAGGTCAGACCGAACAGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATAG 2901 41.85 MGKNKKRKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSKLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQFAVAEDANRAIELKNGMSVEGRKITVKHAMHRAPLEQRRSKENQATASKSTINEEGDTSKREEQTINEDRDTSKREEQTTNEDRDTSEKAEQTTSNSEGKERHLNARELASLSSYLEDKEGHSGKQRIARTVVFGGLLNADMAEDVHCQARDVGDICSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKQMKGGVVWARQLGGEGSKTQKWKVIVRNLPFKAKEKEIKDTFSSAGFVWDVMMPHSSDTGLSKGFAFVKFTCKQDAESAIKKFNGQKFGQRTIAVDWAVPKKIYSSGASAPVDSDDGEQTERDREGSISSDDFEAENTAVHEKSQCSNKDESSSEDSEKEDISSEVNFEGEAEMARKVLENLISSSAKEALPSSIDGNPPSKVNKEPDFDSSKKSSDVSDKVSNEPGKLNESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTVNAATAAVSSANVASGVGIFLRGRQLKVLNALDRKSAHDKELEKSKNDNHDHRNLYLAQEGIILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKLLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNTANVPKAWQRNVNTDTIAGDVHSNKNNSRKRKAMGDNRPVRNKDENDNHVSNDVAMEENRAIKKRKTHPEIGNTNKLLRQKPEGRRSMPEKSSNRSVSMDSGKIKASQEADVQHKKKVKHQVEQQRKRPKKNKEPIGRDVVDKLDVLIEQYRSKFLQQRSDRTDGEKKGSKQVRRWFQS 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4810019 4822332 - CcPI632755_02g005170.1 Cco02g0517 171274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0517 966 MobiDBLite consensus disorder prediction 461 509 - -
Cco02g0517 966 SMART rrm1_1 673 764 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 SMART rrm1_1 521 599 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 SMART rrm1_1 296 369 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 SMART rrm1_1 24 97 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 MobiDBLite consensus disorder prediction 379 441 - -
Cco02g0517 966 PANTHER RNA-BINDING MOTIF PROTEIN 14B 20 966 IPR051945 GO:0003729(PANTHER)
Cco02g0517 966 MobiDBLite consensus disorder prediction 791 810 - -
Cco02g0517 966 Gene3D - 496 621 IPR012677 -
Cco02g0517 966 Pfam RNA recognition motif 25 95 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 Pfam RNA recognition motif 297 366 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 Pfam RNA recognition motif 522 582 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 MobiDBLite consensus disorder prediction 124 174 - -
Cco02g0517 966 SUPERFAMILY RNA-binding domain, RBD 663 751 IPR035979 GO:0003676(InterPro)
Cco02g0517 966 CDD RRM4_RBM28_like 672 769 - -
Cco02g0517 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 520 603 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 MobiDBLite consensus disorder prediction 914 960 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 1 15 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g0517 966 Gene3D - 671 766 IPR012677 -
Cco02g0517 966 SUPERFAMILY RNA-binding domain, RBD 520 691 IPR035979 GO:0003676(InterPro)
Cco02g0517 966 Gene3D - 281 418 IPR012677 -
Cco02g0517 966 SUPERFAMILY RNA-binding domain, RBD 291 385 IPR035979 GO:0003676(InterPro)
Cco02g0517 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 CDD RRM1_RBM28_like 24 102 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 811 859 - -
Cco02g0517 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 672 780 IPR000504 GO:0003723(InterPro)
Cco02g0517 966 SUPERFAMILY RNA-binding domain, RBD 23 281 IPR035979 GO:0003676(InterPro)
Cco02g0517 966 Gene3D - 2 115 IPR012677 -
Cco02g0517 966 MobiDBLite consensus disorder prediction 388 441 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 100 174 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 479 500 - -
Cco02g0517 966 CDD RRM2_RBM28_like 296 372 - -
Cco02g0517 966 MobiDBLite consensus disorder prediction 791 966 - -
Cco02g0517 966 FunFam RNA-binding motif protein 28 671 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0517 K14573 - - csv:101217384 1583.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0517 Cco-Chr2:4810019 Cco04g2348 Cco-Chr4:36943206 7.60E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34