Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0529 ATGATACGTAAATCATTTTTGGCATTTTATTTCAAATTTAGCGAAACCCCGTTGGAGTTTGGGAAGCGCTGGTCTGTGACTGTGAGAGTCCGTTTTATCTCTGCTTTGGTACTCCGGACATGCTCACGTGGCAGTCATGAGAAACAAGACCTTCTTTTGGCTCTTGGTAGTGGTGGGATTTCCTTTGAATTTGAGGATTTCTTTGTTTTTCTGAGGTGGGGTTGTGGTTTTTTTGTTTGGAGAAAGATGAACAGAGCATTACCGGAGATGTTGCATTGTTTGAACACTACCGGGAACTGTCCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAACAGCAGCCATTGAATCAGAGCTGTTTCAATAAGGTTGACTACGGCGGTGGATTTCCGCCGCCGGTGGCTGTTCCAGCGGATCACTTCACGGGGTTTCCTGGGTACATGAGTGGCGGCGGCGGTGGTGGAGGTGGTGGGTTGTCACTTGTTGAGATGGTAATGGGGGCAGTGAAGCCTGACCCTGGGTTGAATGATGGGTGGTCTGAAATGGGAAAGTTTGATCCTTCTTTGTTGTTGAATGCCACTGCTTATGAGCTCAATTCTTCTCTCTCTAGAACCTCCAGCTGCCCGCCGGCGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCGGCGGCTGGAAGAGATAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCACCACCACCACCACCACCAACAACAACAACAACAACAACAACAACAAGGTGACTGTGGAAGAAGATAACAACAACAGCAGCAGCAAGGAGAAGAGGATCAAAGCAAGTTCAGAAGAAGGAGAATTATCCAAAACCACAGATCAAAACAGTACCAAAAACAACTCAACCACCACAACCACAACAAACAATAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAGGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCTACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATCATAAACTATGTCCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCCCCATCTTGCACCACCGCGAACTTCCCGACGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCTTCCTACTTACAATTCAATCCAAATAATCAACAAATGGTCTCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTCGCCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAACTTTCCTCGATTCATCTTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCAACCATATACAGGTTCAATTGAAGGAGGCAATATAAAGATGGAAATGTGA 1653 45.86 MIRKSFLAFYFKFSETPLEFGKRWSVTVRVRFISALVLRTCSRGSHEKQDLLLALGSGGISFEFEDFFVFLRWGCGFFVWRKMNRALPEMLHCLNTTGNCPDTLSVLERQRARLKWQQDQLLQQQQQPLNQSCFNKVDYGGGFPPPVAVPADHFTGFPGYMSGGGGGGGGGLSLVEMVMGAVKPDPGLNDGWSEMGKFDPSLLLNATAYELNSSLSRTSSCPPAVAPTVAEKMGSAAGRDSFKKRKAEKVHNTTTTTTTNNNNNNNNNKVTVEEDNNNSSSKEKRIKASSEEGELSKTTDQNSTKNNSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTTANFPTIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDVAALRRTISAPVSFPETFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGGNIKMEM 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4951182 4954386 - CcPI632755_02g005290.1 Cco02g0529 171286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0529 550 MobiDBLite consensus disorder prediction 323 338 - -
Cco02g0529 550 Coils Coil 104 127 - -
Cco02g0529 550 MobiDBLite consensus disorder prediction 252 275 - -
Cco02g0529 550 MobiDBLite consensus disorder prediction 276 294 - -
Cco02g0529 550 CDD bHLH_AtBPE_like 338 423 - -
Cco02g0529 550 MobiDBLite consensus disorder prediction 237 251 - -
Cco02g0529 550 Pfam Helix-loop-helix DNA-binding domain 352 399 IPR011598 GO:0046983(InterPro)
Cco02g0529 550 MobiDBLite consensus disorder prediction 230 338 - -
Cco02g0529 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983(InterPro)
Cco02g0529 550 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 238 465 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco02g0529 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983(InterPro)
Cco02g0529 550 SMART finulus 354 404 IPR011598 GO:0046983(InterPro)
Cco02g0529 550 FunFam Basic helix-loop-helix transcription factor 345 417 - -
Cco02g0529 550 MobiDBLite consensus disorder prediction 295 322 - -
Cco02g0529 550 Gene3D - 345 419 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0529 Cco-Chr2:4951182 Cco08g1056 Cco-Chr8:22363287 7.80E-35 dispersed
Cco01g0767 Cco-Chr1:8056607 Cco02g0529 Cco-Chr2:4951182 2.60E-43 transposed
Cco05g0854 Cco-Chr5:7203957 Cco02g0529 Cco-Chr2:4951182 1.10E-39 transposed
Cco05g2606 Cco-Chr5:34317066 Cco02g0529 Cco-Chr2:4951182 5.90E-38 transposed
Cco05g2919 Cco-Chr5:36719300 Cco02g0529 Cco-Chr2:4951182 1.10E-35 transposed
Cco08g1853 Cco-Chr8:29551013 Cco02g0529 Cco-Chr2:4951182 1.10E-29 transposed
Cco09g0834 Cco-Chr9:7790126 Cco02g0529 Cco-Chr2:4951182 1.50E-37 transposed
Cco10g1708 Cco-Chr10:30630282 Cco02g0529 Cco-Chr2:4951182 1.50E-35 transposed
Cco11g0449 Cco-Chr11:4696714 Cco02g0529 Cco-Chr2:4951182 1.90E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58722 PF00010 HLH 1.60E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0529 - - - 0.0