Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0538 ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATGGGTGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTACTTGTGGAAGATGTTAAGTATATTGAGTCCGGTGAAATTCCTTTTCCCTAA 222 40.99 MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAMGGKTEEEVKRHYQLLVEDVKYIESGEIPFP 73
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5093358 5093579 - CcPI632755_02g005380.1 Cco02g0538 171295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0538 73 Gene3D - 5 72 - -
Cco02g0538 73 SMART sant 9 61 IPR001005 -
Cco02g0538 73 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 10 73 IPR044636 GO:0003700(InterPro)
Cco02g0538 73 FunFam Transcription factor SRM1 6 72 - -
Cco02g0538 73 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Cco02g0538 73 ProSiteProfiles Myb-like domain profile. 12 59 IPR001005 -
Cco02g0538 73 CDD SANT 12 59 IPR001005 -
Cco02g0538 73 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0538 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0538 Cco-Chr2:5093358 Cco05g2147 Cco-Chr5:30364896 1.30E-22 dispersed
Cco02g0536 Cco-Chr2:5059789 Cco02g0538 Cco-Chr2:5093358 6.20E-29 proximal
Cco02g0538 Cco-Chr2:5093358 Cco02g0539 Cco-Chr2:5102069 2.10E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g598 . . . Bda08g01283 . Bpe12g00081 . Bma12g00518 Cmo19g00682 . . Cma20g00850 Car02g00260 . . Cpe04g00118 Cpe15g00545 Bhi05g01235 Tan02g0794 . . Hepe02g0503 . . Cla02g00516 Cam02g0528 Cec02g0530 Cco02g0538 Clacu02g0529 Cmu02g0523 . . . Cone3ag1164 Cone10ag0959 Lsi10g00367 . Chy11g00379 Cme01g01409 Blo04g00513 Blo13g00552 Bda15g00005 Bda14g00555 Bpe15g00865 . Bma03g00553 . Sed01g0302 Cmo02g00403 Cmo20g00859 . Cma19g00672 . Car19g00513 . . Bhi10g02012 Tan05g1311 Cmetu11g2150 . Hepe08g1017 . . . . . . . . . Lsi11g01107 Csa02g01255 Chy01g00780 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58725 PF00249 Myb_DNA-binding 4.10E-06 CL0123 Cco TF