Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0546 ATGTTATCTTCTTCTTCATCTTTGTACTCAAACCCACATCCCCACTTCCATCCTCTTCATTTCCGCCCTCCAAATCCTCTCTCCAATGTCTTCCACTTCCTCTCCAGCCACAAACCCACCGCCACCGTCGTCTCCGCCTATCTCCGCCCCAACAATCCCACAGAAAAACCATCCACCAGCGTCTCCGATCACATCCACCCGGAACCCCGCAAACACAACTCCAAATCCGCCTCCCTTCTCAACCAGTACCTATCGTCCGGCGAATCCCCTAATCCGCAAAACCCAGAACCCCCTTTGCCGGAAGAAGAGAGAGTGCAGCTTCTTGAGCTCTCTCTTGTAAGAAAACGAACACCTCAATTTCCTGGATCTATATATGTTCAATCCCCGAGTGATTCCGATGTGGGTTCTTCTCTGCCCCCCTTGCAATCTCTGTTTCGAAATGGAGGAAGTGAATTTGATGGTGAAGATGACCGGAAGTTGATAAGGAGGGCTCTCGAGATTCGCCGGAAGGTGACTTCTGAGATCTTTAAAGAGGCGATGCGGAAGGGGAAATTTGGAATCACTTACACCAACAATTTGCTTGGGTGGTTGTCTGATTTCATTGATTTCGTGATGATTCAAGCTTCTTCCATGAAGCAGTCGCCTGAATTTGCTCATTTGTCGTTCAATGTTCGTGCGAAGACCGTCATTGAAGATTCAAATGTTGTGCCACTTATCAGGTGGTTGAAGCATAACTCATTGTCGTATCCACAGATAGGAAAGCTGATTTGCATGTCGAGGGGAAAGCTTGAATCTATTAGACGTCTTGTGGAATGGCTGAAAGGAATTCATGTGAAGGGCGGATATCTTGGACTTGCACTCACGAAAGCTGGAGGGAATATATTGGAACGAAGCAATAAGGAATTAGATGAGATTGTGGACTACTTGGAGAGTAATGGAGTTAGAATGGTTTGGATGGGCTTTGTCATGAGTCGATGTCCTTACTTGTTGTCTTACAGCATGGAAGAACTGAAAACTCGTGTAGAGTTCTTCTTGAATATGGGTATGAATGACAGAGACTTTGGCACAATGGTCTTTGATTACCCGAAGGTGCTTGGACAGTATACTGTTGAAGATATGAACCAAAAGGTCAACTATTTAAAGGAGTTTGGCCTTGAGATTGAGGATATAGGCAAATTACTAGCGTACAAACCACAATTGATGAATTGTAGTATTGAGGATAAATGGAAGCCTCTTGTTAAGTATTTCTACTATCATGGAATTTCCAAAGATGGTTTGAGGAGGATGCTTACAATCAAGCCAGTGGTTTTCTGCCTTGATCTGGAGACAATCATTGTGCCAAAGGTGCAATTCTTCAAAGACGTAGGAGTTCGAGATGATGGGATTAGTAACATGCTTGTGAAATTTCCATCACTATTGACATTCAGCCTGTACAAGAAAATCCGTCCTGTTGTCATATTCTTGATGACCAAAGCAGGAGTCAGGGAGAAGGACATTGGGAAAGTTATAGCTTTGGGGCCAGAGCTTTTTGGTTATAGCATAGTGCATAAGCTTGAGGTCAATCTAAAGTATTTTCTGTCACTCGGCATATACACCCAGAATCTAGGAGAAATGATCACTGATTTCCCTATGCTGCTCCGATATAATATCGACATTCTTCGACCGAAGTATCAATATTTGCGGAGGACCATGGTTCGCCCTCTGCAAGATCTTATAGACTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGGCGCATCATCCCTAGGCATCAAGTTCTAGTTGAAAATCGTATAAATATCAATTTACGTTCTATGTTAGCTTGCACAGATGAAGAGTTTAAGAACAAGGTTGCAGATATAGTGGAAAAACGCCAAAGATTTGAATCTGGTAAAATCGATGGTTCTCTCTCCATTGCCCATACAACTCACAACTCTATTGACTCAACTATCCAAAGACATTTGAGAACAAAAGACCTTCCCAACAGAGAGAAGTTAAGAAGGTTAGAACAAAACAATGATGATGCCAAGTGTTAG 2034 43.17 MLSSSSSLYSNPHPHFHPLHFRPPNPLSNVFHFLSSHKPTATVVSAYLRPNNPTEKPSTSVSDHIHPEPRKHNSKSASLLNQYLSSGESPNPQNPEPPLPEEERVQLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPLQSLFRNGGSEFDGEDDRKLIRRALEIRRKVTSEIFKEAMRKGKFGITYTNNLLGWLSDFIDFVMIQASSMKQSPEFAHLSFNVRAKTVIEDSNVVPLIRWLKHNSLSYPQIGKLICMSRGKLESIRRLVEWLKGIHVKGGYLGLALTKAGGNILERSNKELDEIVDYLESNGVRMVWMGFVMSRCPYLLSYSMEELKTRVEFFLNMGMNDRDFGTMVFDYPKVLGQYTVEDMNQKVNYLKEFGLEIEDIGKLLAYKPQLMNCSIEDKWKPLVKYFYYHGISKDGLRRMLTIKPVVFCLDLETIIVPKVQFFKDVGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAGVREKDIGKVIALGPELFGYSIVHKLEVNLKYFLSLGIYTQNLGEMITDFPMLLRYNIDILRPKYQYLRRTMVRPLQDLIDFPRFFSYSLEGRIIPRHQVLVENRININLRSMLACTDEEFKNKVADIVEKRQRFESGKIDGSLSIAHTTHNSIDSTIQRHLRTKDLPNREKLRRLEQNNDDAKC 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5211573 5216487 + CcPI632755_02g005460.1 Cco02g0546 171303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0546 677 Gene3D Transcription termination factor 3, mitochondrial 382 627 IPR038538 -
Cco02g0546 677 SMART mt_12 500 531 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 320 350 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 355 386 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 391 422 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 536 566 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 568 599 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 463 495 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 285 315 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 SMART mt_12 427 458 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 MobiDBLite consensus disorder prediction 48 77 - -
Cco02g0546 677 Pfam mTERF 306 614 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco02g0546 677 PANTHER CGI-12 PROTEIN-RELATED 234 388 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0546 K15031 - - csv:101220316 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0546 Cco-Chr2:5211573 Cco10g1337 Cco-Chr10:26334438 1.10E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58726 PF02536 mTERF 3.80E-67 No_clan Cco TR