Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0547 ATGTATAAAAAGGCCTGTGTTGGGCTTTGCTCGAATATCCACAACGAAGCCCAAGCCCAAAACGTATCGTTTCATCGACCGGAAATCCGAACTGTTTCAGGGAATCCAGCGATCACAAGCTCAGTAGTTTCTGCAAAGAGAAGCATTTGGGAATCCCACCCTTTGAGTAGCGGTGAAAAGCATCGGCTTACAACACAGCCACAATTTGTCATGGCTGCGATCTTAGCTCGGAAATCCCTTCTCGCTCTTCGTGCTCGTCAGCTTGCCGTCTCTGGACAAGCACTGCAAGGTTCTCCTTTCCATGGTCTCCGGTCAAGTGCACACTTGTACAGTACCAAAAAGGAAGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATCTCGAAGGATTGGAGTTCTATTTTTGAGCGTAGCATAAACACACTATTTCTCACTGAAATGGTTCGGGGTCTGAGTCTGACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTATCCATTTGAGAAAGGTCCCCTAAGTCCTCGTTTCCGAGGTGAGCATGCCCTCCGACGATATCCAACTGGAGAAGAACGATGCATTGCATGCAAACTTTGTGAAGCTATTTGTCCTGCTCAAGCAATCACAATCGAAGCTGAGGAACGGGAAGATGGTAGCCGGAGGACCACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGGTTCTGTCAAGAGGCATGCCCTGTTGACGCAATTGTTGAAGGTCCCAACTTTGAGTTTGCAACAGAGACTCACGAGGAGCTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAAAACCTCAGATCCGAAAGCCTCTATCGCTGA 879 47.1 MYKKACVGLCSNIHNEAQAQNVSFHRPEIRTVSGNPAITSSVVSAKRSIWESHPLSSGEKHRLTTQPQFVMAAILARKSLLALRARQLAVSGQALQGSPFHGLRSSAHLYSTKKEDEEREQLAKEISKDWSSIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5218022 5222638 - CcPI632755_02g005470.1 Cco02g0547 171304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0547 292 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 125 292 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Cco02g0547 292 SUPERFAMILY 4Fe-4S ferredoxins 166 276 - -
Cco02g0547 292 Pfam 4Fe-4S dicluster domain 192 246 IPR017896 -
Cco02g0547 292 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 140 276 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Cco02g0547 292 NCBIfam NADH-quinone oxidoreductase, chain I 149 270 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Cco02g0547 292 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 184 213 IPR017896 -
Cco02g0547 292 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 232 243 IPR017900 -
Cco02g0547 292 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 IPR017900 -
Cco02g0547 292 FunFam NADH-quinone oxidoreductase subunit I 1 166 289 - -
Cco02g0547 292 Gene3D - 166 291 - -
Cco02g0547 292 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 223 252 IPR017896 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0547 K03941 - - csv:101219679 425.246
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32