Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0553 ATGGTGGTGTCACATTCATGTTTTAGAGGAGATCTTGATGTTGTGCTGTATATTAAGGAAGAAAAAGAATTGCTGAAATTCTTGAAGAGTGTCTTCAAAGTTGAAGAAGGAGGCCCAGCCCATATTTTAATTCCTGATGAGCTTGTCACTCAGTTTCTCTTTCGTCTCCAACCTAAGCAAAAGCCCGTCACAAGATCGAACAAACAGCGTATCTCCGGTTTTTTCTTCCTTCTTCACAGCCACTACAAACCTTGCTTCGCTTTCCTCTGCTGGTCGTCTCTAGATCTCTCAGATTCAAATCCTTCGCCCATGGCTCAGCCTCTCATCAAGAAGGACGACGACCGCGATGACGAAGCTGAGTATTCTCCGTTTTTGGGGATTGAGAAGGGTGCTGTTCTTCAGGAAGCTAGGGTTTTTAATGATCCTCAGTTAGATCCAAGAAGATGCTCTCAGGTTATCACGAAGCTTTTGTACCTTCTGAATCAGGGTGAAAACTTCACAAAGATTGAAGCCACCGAAGTTTTCTTTGCTGTCACAAAGCTTTTTCAGTCAAGAGATATAGGGTTGAGGAGAATGGTTTATTTGATAATAAAGGAGCTTTCTCCGTCTGCTGATGAGGTTATTATTGTGACTAGCTCCCTAATGAAGGACATGAATAGTAAGACTGATATGTATCGGGCAAATGCCATTCGTGTGCTTTGTCGGATTACAGATGGAACCCTTCTCACCCAGATCGAGAGGTATCTGAAACAAGCAATTGTAGATAAGAATCCTGTGGTAGCTAGTGCTGCCTTAGTCAGTGGTATTCATTTGCTTCAGACAAATCCAGAAATTGTCAAGCGGTGGAGTAATGAGGTTCAGGAAGCTGTTCAGTCAAGGGCAGCACTTGTTCAATTTCACGCTCTTGCCTTGCTTCACCAAATACGTCAAAATGATCGTCTAGCTGTTAGCAAACTGGTCACTAGCCTGACAAGGGGTACTGTTCGGTCTCCATTGGCTCAATGCCTCTTGATTCGCTATACCAGTCAGGTTATTCGCGAATCAGCTACCAGTACTCAAACTGGTGATCGGCCCTTCTACGATTTTCTTGAGGGTTGTCTGCGCCACAAAGCAGAGATGGTGATCTTTGAAGCTGCCAAAGCAATCACTGAGCTGCATGGTGTAACAACCAGAGAATTGACACCGGCTATTACGGTCCTTCAGCTGTTTTTAAGCTCCTCAAAGCCGGTACTGAGATTTGCTGCTGTCCGGACTTTAAATAAGGTGGCAATGACTCATCCAATGGCTGTCACTAACTGCAATATCGATATGGAGAGCTTGATTTCTGATCAAAACAGAAGCATTGCAACTCTTGCAATAACAACACTTCTGAAAACAGGAAATGAATCAAGTGTGGACCGTCTAATGAAGCAGATAACTAACTTTATGTCTGATATTGCGGATGAGTTTAAAATTGTCGTGGTAGAAGCTATTAAATCTTTGTGTTTGAAGTTCCCATTGAAGTATAGATCTCTGATGAATTTCCTTAGCAACATTCTCAGAGAAGAAGGGGGCTTTGATTATAAAAAAGCTATTGTGGACTCAATTGTAATTCTTATAAGAGATATTCCTGATGCAAAAGAGAGTGGGTTGCTTCATTTGTGTGAGTTTATTGAAGATTGTGAATTCACCTATCTTTCCACACAGATCCTTCACTTTCTGGGGATTGAAGGACCCAAAACCTCTGATCCTAGCAAATACATACGATACATATACAACCGAGTACATCTTGAAAATGCAACTGTTCGTGCCAGTGCTGTGAGCACATTAGCAAGATTTGGTGTTACAGTTGAATCATTGAAGCCTCGAATATTTGTTCTGTTGAGACGATGTCTCTTTGACAATGACGATGAGGTTCGAGATAGGGCCACCCTATATTTAAAAACTCTAGGAGGTGATGATACAGTTACCGAAACTGAGAAGGATGTCACTGACTTTCTATTTGGCTCTCTGGATGTCCCACTGGTCAATCTAGAAACAAGTTTGAAGAATTATGAGCCTTCTGAGGAACCTTTTGACATTGATTCCGTGCCCAAGGAGATCAAGTCTCAGCCACTTGCTGAGAAGAAAGCTCCAGGTAAAAAGGCAGCTGGGCTGGGTGCTCCTCCAAGTGGCCCAACAGCCACTGTTGATGCATATGAAAAGCTGCTTTCCTCAATTCCAGAATTTGCAGACTTTGGGAAACTCTTCAAGTCTTCAGCACCTGTGGAGCTTACAGAAGCAGAAACGGAATATGCAGTTAATGTTGTTAAGCACATTTTTGATAGCCATGTTGTGTTTCAGTACAACTGCACAAATACAATTCCAGAGCAACTACTTGAAAATGTCATTGTTGTTGTTGATGCGTCTGAAGCAGAGGAATTCTCTGAAGTGATATCCAGGCCTCTCAGATCACTTCCCTATGATTCACCCGGACAGACCTTTGTGGCATTTGAGAAACCTGAAGGGGTCGCTGCTGTTGGGAAATTTTCAAACATGTTGAGATTTATTGTTAAAGAGGTTGACCCAAGCACAGGTGAGGCAGAAGAAGATGGTGTGGAGGATGAATATCAGTTGGAGGATTTGGAGGTTGTTGCAGCTGATTACATGTTGAAAGTAGGGGTCTCTAATTTTAAGAATGCATGGGAGAGCTTGGGTCCAGACTGTGAACGAGTTGATGAATACGGCCTTGGACCAAGGGAAAGTTTGGTGGAAGCTGTAGGTGCTGTTATAAACCTTCTTGGCATGCAGCCGTGTGAGGGTACTGAGGCTGTCGCAAGCAACTCAAGATCACACACCTGCCTATTATCTGGTGTATACATTGGCAACGTGAAGGTACTCGTGCGATTATCGTTCGGAATTGATTCATCACGAGAGGTTGCGATGAAGCTGGCCGTTAGATCAGATGACGAAGTCGTGAGTGATGCCATCCATGAGATAGTTGCCAGCGGCTAG 2973 43.32 MVVSHSCFRGDLDVVLYIKEEKELLKFLKSVFKVEEGGPAHILIPDELVTQFLFRLQPKQKPVTRSNKQRISGFFFLLHSHYKPCFAFLCWSSLDLSDSNPSPMAQPLIKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDPRRCSQVITKLLYLLNQGENFTKIEATEVFFAVTKLFQSRDIGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESATSTQTGDRPFYDFLEGCLRHKAEMVIFEAAKAITELHGVTTRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIKSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLARFGVTVESLKPRIFVLLRRCLFDNDDEVRDRATLYLKTLGGDDTVTETEKDVTDFLFGSLDVPLVNLETSLKNYEPSEEPFDIDSVPKEIKSQPLAEKKAPGKKAAGLGAPPSGPTATVDAYEKLLSSIPEFADFGKLFKSSAPVELTEAETEYAVNVVKHIFDSHVVFQYNCTNTIPEQLLENVIVVVDASEAEEFSEVISRPLRSLPYDSPGQTFVAFEKPEGVAAVGKFSNMLRFIVKEVDPSTGEAEEDGVEDEYQLEDLEVVAADYMLKVGVSNFKNAWESLGPDCERVDEYGLGPRESLVEAVGAVINLLGMQPCEGTEAVASNSRSHTCLLSGVYIGNVKVLVRLSFGIDSSREVAMKLAVRSDDEVVSDAIHEIVASG 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5286851 5295220 - CcPI632755_02g005530.1 Cco02g0553 171310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0553 990 FunFam Coatomer subunit gamma 126 419 - -
Cco02g0553 990 SUPERFAMILY ARM repeat 132 690 IPR016024 -
Cco02g0553 990 PANTHER COATOMER SUBUNIT GAMMA 104 987 IPR017106 GO:0000139(PANTHER)|GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0006888(PANTHER)|GO:0006891(PANTHER)|GO:0009306(PANTHER)|GO:0030126(PANTHER)
Cco02g0553 990 FunFam Coatomer subunit gamma 872 988 - -
Cco02g0553 990 Gene3D - 872 988 IPR012295 -
Cco02g0553 990 MobiDBLite consensus disorder prediction 698 717 - -
Cco02g0553 990 SUPERFAMILY Clathrin adaptor appendage domain 720 874 IPR013041 -
Cco02g0553 990 Pfam Adaptin N terminal region 130 643 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cco02g0553 990 Pfam Coatomer gamma subunit appendage platform subdomain 725 870 IPR013040 GO:0005198(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030126(InterPro)
Cco02g0553 990 Gene3D Coatomer, gamma subunit, appendage domain 719 871 IPR037067 GO:0005198(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030126(InterPro)
Cco02g0553 990 PIRSF Gamma-COP 110 988 IPR017106 -
Cco02g0553 990 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 875 987 IPR009028 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cco02g0553 990 Gene3D - 126 419 IPR011989 -
Cco02g0553 990 FunFam Coatomer subunit gamma 718 871 - -
Cco02g0553 990 FunFam Coatomer subunit gamma 436 644 - -
Cco02g0553 990 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 873 987 IPR032154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0553 K17267 - - csv:101218494 1657.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0458 Cco-Chr11:4810566 Cco02g0553 Cco-Chr2:5286851 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001661 4 2 3 0 2 2 3 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 3 1 70