Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0555 ATGGAGGAGAAGCGCCGCGACACCGCAAATTTACCGCCTAATACAACCGATTCTCCCTCATCGGAGCCGCCTTCTTCTCGCCGTCGTGCTGGAGCTCAGAAGCGAAAGGCTAGCGCTCTTGGTGGCTCTAACTCCTCATCCGGGCCCTCGAAACGCGTTACTCGCGACAAATCTGCGCTTTCGCATCCTCCAAATCATAACGGCCCCTTCACCAGAGCTCGACTTGGCCCTAACAATGGCGCTGGGGCAGCATCGGCTAACGCGGCTGGAGGTCTCGCCGCCGGATCAGTTAAGGCGGAGGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGATGCGTTGGTCGCTGCGGCGGAGGAATTGAATAAGGCGAGTAGATTGGCTAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCTATTAAATCTCGAGGTGCAAATGTTCATGTCGTTCCGAATCATTGTGGTTGGTTTTCATGGACAAAAGTCCACCCAATTGAGGAACGCACAATGTCTACTTTTTTCAGTGGAAAGGTTGGCACTCGAAGTCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAGTTCCACGCAAATCCTAGTAAGCAGATTGAATCAAAAGATTTATCAGAGCTGGAAGTTGGAGAATTAAATGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCCAGCCGCAGATTCAATTTCAACAAATGATGTTGATGATGAAAATCAAAAGGACTCCTTGGTTGAGAAGTTGTTTCACTTTGAAACGTTAGAATCCTGCCCATCTATTGTTCCAAAGATTAATGCTACCACTGCAGCTCCACCTAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCATGCTCTGCTGATTGCTCCCGGAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCTGATATGTCTTCGTCAGATTTTATTCTCATGGAGTCTGCTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAGTCTGAAGGCAACGTGGAAGTCAGTGCAAAAGAAACAATTGTTCCACCTATAATTGAAAAAGATACATCAGCTCCTTCTGATATCACTGAATCAATGGATAATAAGGCTACTGAAAAAGAGGCTTCAAATGTAGAAACTGTGAGCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCAGGACAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTTCTTTAGATAACTCTAAATCAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGCAGGAGGCATTTGAAGCCATTGGTTATGTATTAACACCTGAACACTCACTTTCATTTGCTGATGTAGGAAACCCTGTAATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAATGCATCAGCCCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGACCTGGCTACAAGGAACTGCTTTATTCTAGAAGATCCACCGGATGACAAGAAGGCACAAGCTAATTCAGAGAGCATTGACAATGTGGAAGCTCCGAAAAATGATAAGGAACAGTCTGCGAAACAGAGGGAAGACAATTCTACTTCAGTCTTAGATGACGGAGCCGTATCAACTAATAACAGTAATAACAAAAGTGGAGAATCTGTGACCAAGGGGACAACGGAGAATGGAAATTCTTCAGATGCTATTAGAGAACACAATGCAATCATCAATCATGGTTCAGATAAAACAAGTAATTTAAAAGAATTGGGAGAACCAGAATTGCCGAAGGGTGTAAAAACAGGCATTGTGAAGGAATCTGAAAATTTAGAATCAAAATTGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTCCTGTTGAAAAGCCATCACAATCTACGTTGTCATCAAAGGATGTGCACATGTCAGATTTGCAGCATGCTGAAAGATCTGAGATTCAGAAACAAGATCCATCTCATTCTGCCAAAACTTCAAAAGAATTAAATGATGAGCCAAATCATTTACCGTCTGGGGACGAGCCTGAAACAATAATTTCTGCTAATTGTGTGAAAGAAGCCTCGAACGATGTAGCTATGGTGTCTGATTCTCACGATAAGAATGAACCTAGACAAACTGAAACATCTAAATCTGCGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCTCAGCAGAGAATGCAACTCCACAATCAGTCAAACCAAATTCAGTTGTTGAAAGAGGAGCAGATGATAATGAAAGCAAGGACAATAAAGAAGAAAACTCCAATAGTGCGAGTAAAAAAGACAATAAAATTGATAAGCTGAAGCGTGCTGCAGTTACGACGTTGTCAGCAGCTGCAGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAGGACCAAATCCGTCAACTCGCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGAGATGGATAATGTGACAATGAGAGTGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATTGCTGCTCGACTCGGCATACCTGCTTCATCGTCACGAGGTGTAGCACCGACATTACCAGCAAACAGAATGGCCATGAACTTTCCAAACTCAGCACCAAGGCCTCCAATGGGCATGACACCCCAAAGGCCACCGACTTCAGGACCACCGGGTATGGCTGCTACTAACCCTAACCCCCAATACACAACCACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTACAAATCAGGACACACTTTCTTCTGTTGGGACCAAGTAA 3081 43.69 MEEKRRDTANLPPNTTDSPSSEPPSSRRRAGAQKRKASALGGSNSSSGPSKRVTRDKSALSHPPNHNGPFTRARLGPNNGAGAASANAAGGLAAGSVKAEGSLLHSEVQRGDALVAAAEELNKASRLANLEASFEADFEAIKSRGANVHVVPNHCGWFSWTKVHPIEERTMSTFFSGKVGTRSPDIYIEIRNWIMKKFHANPSKQIESKDLSELEVGELNARQEVMEFLDHWGLINFHPFPAADSISTNDVDDENQKDSLVEKLFHFETLESCPSIVPKINATTAAPPRLLRESAISEEMVRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEGNVEVSAKETIVPPIIEKDTSAPSDITESMDNKATEKEASNVETVSKEDTGEVKVGQDNSKSEDVEGKASLDNSKSEDGDQKVSEDIALNALQEAFEAIGYVLTPEHSLSFADVGNPVMALAAFLARLVGSDVANASAHFSLKSISQKSPSLDLATRNCFILEDPPDDKKAQANSESIDNVEAPKNDKEQSAKQREDNSTSVLDDGAVSTNNSNNKSGESVTKGTTENGNSSDAIREHNAIINHGSDKTSNLKELGEPELPKGVKTGIVKESENLESKLTSNPVEKLGEGTPVEKPSQSTLSSKDVHMSDLQHAERSEIQKQDPSHSAKTSKELNDEPNHLPSGDEPETIISANCVKEASNDVAMVSDSHDKNEPRQTETSKSAVDQGASKVSDSLPSAENATPQSVKPNSVVERGADDNESKDNKEENSNSASKKDNKIDKLKRAAVTTLSAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFNEMDNVTMRVREQLDRSKQRLFQERAQIIAARLGIPASSSRGVAPTLPANRMAMNFPNSAPRPPMGMTPQRPPTSGPPGMAATNPNPQYTTTSTTISGSSFRPTNQDTLSSVGTK 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5301823 5311402 - CcPI632755_02g005550.1 Cco02g0555 171312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0555 1026 FunFam SWI/SNF complex subunit SMARCC2 isoform C 364 415 - -
Cco02g0555 1026 CDD SANT 385 410 IPR001005 -
Cco02g0555 1026 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Cco02g0555 1026 Gene3D - 155 240 IPR036388 -
Cco02g0555 1026 Pfam SWIRM domain 159 237 IPR007526 GO:0005515(InterPro)
Cco02g0555 1026 ProSitePatterns Zinc finger ZZ-type signature. 312 338 IPR000433 GO:0008270(InterPro)
Cco02g0555 1026 MobiDBLite consensus disorder prediction 583 858 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 834 858 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 670 692 - -
Cco02g0555 1026 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Cco02g0555 1026 Gene3D - 303 353 IPR043145 -
Cco02g0555 1026 SMART zz_5 306 350 IPR000433 GO:0008270(InterPro)
Cco02g0555 1026 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270(InterPro)
Cco02g0555 1026 MobiDBLite consensus disorder prediction 992 1026 - -
Cco02g0555 1026 Gene3D - 364 415 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 434 502 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 11 27 - -
Cco02g0555 1026 SUPERFAMILY Homeodomain-like 364 417 IPR009057 -
Cco02g0555 1026 Pfam SWIRM-associated region 1 870 946 IPR032451 -
Cco02g0555 1026 SUPERFAMILY RING/U-box 308 356 - -
Cco02g0555 1026 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270(InterPro)
Cco02g0555 1026 MobiDBLite consensus disorder prediction 784 799 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 728 763 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 450 502 - -
Cco02g0555 1026 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 800 830 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 973 991 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 713 727 - -
Cco02g0555 1026 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 1 86 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 967 1026 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 38 65 - -
Cco02g0555 1026 CDD ZZ_RSC8 310 354 IPR041984 -
Cco02g0555 1026 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515(InterPro)
Cco02g0555 1026 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Cco02g0555 1026 PANTHER SWI/SNF COMPLEX-RELATED 740 973 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 583 620 - -
Cco02g0555 1026 MobiDBLite consensus disorder prediction 621 657 - -
Cco02g0555 1026 SMART sant 365 413 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0555 K11649 - - csv:101218015 1669.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0555 Cco-Chr2:5301823 Cco11g1642 Cco-Chr11:29252665 1.30E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36