Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0597 ATGACTTCATCTCCTTCCTCAGAACAGCCACCGATTCCCCTGCCTCTGAAACCCATCCCCGGCAGCTATGGCTTCCCCATTTTCGGACCCATCAAAGATCGCTACGATTACTTCTACATCCAAGGCAGAGAAAAGTTCTTCCGAACGAGAATGGCTAAATATAACTCCACTGTGTTCCGAGCCAACATGCCGCCGGGCCCCTTCATCTCTTCAAATTCTAAAGTCATCGTCCTTCTCGACGCCCACAGTTTTCCGATCCTCTTCGACACCACTAAAGTCGAGAAACGCAACGTTCTCGATGGAACTTACATGCCCTCCGTCGCCTTCACCGGCGGAATTCGTGCCTGTGCCTTCTTGGATCCCTCCGAAACAGAGCACTCTGTTCTCAAACGCCACTTCCTCAAATTTCTCGCCTCTCGTCATGACAAGTTCATTCCTCTGTTTCGAAGCTCCGTGTCGGAGATGTTCGATAAGCTCGAAAAGGAATTGGAAAAGAATAACGTCGCTAGTTTCAACCCCGTCAGCGATTCGGCCTCGTTCGATTTCATATTTCGATTGCTTTCCGATCGGAGCCCCGATGAGAAATTGAGCTCCGAGGGACCGGGTTTGGTCGATAAATGGCTCAGTATGCAGCTCGCTCCGTTAGCCACTCTCGGTTTGCCCAAATTTCTCACCTGCTTCGAAGATCTCATCATTCATACCTTCCGTTTACCGTTTGCACTCGTCAAAAGCGCTTACAGCAAGCTTTACGACTCATTTTACGAGTCGTCGGGTTCATTTCTAGACGAAGCAGAGAAGCAGGGGATAAACAGAGAGAAAGCATGTCATAATTTAGTGTTTCTAGCCGGATTCAACGCATACGCCGGAATGAAAGTGTTGTTACCGATTATACTAAACTGGGTCGGATCTGCCGGCGAGGGGCTTCATCTGAAACTCGCCGGCGAAATCAGAGCCGCCGTGAAGGAAGACGGAGGACTAACATTCAGCGCCTTAGAGAAGATGAGTCTGCTGAAATCCGTCGTGTACGAGGTTCTGAGGATCGACCCGCCGGTGCCTTACCAATACGCGAAGGCGAAACAGGATATTGTGATCGAGAGCCATGATTCTGCTTTCAAGATCAAGAAAGGGGAAATGATTTTTGGGTATCAGCCGATCGCGACGAAGGATCCGAAGGTGTTTGAGAATCCGGAGGAATTTGTGGGCGATAGGTTCATCGGAGAGAAAGGGGAGAAGCTTCTGAAGTATGTTTACTGGTCGAACGGCCGGGAGACGGAGGAGCCGACGACGGAGAACAAGCAGTGTCCGGCGAGGGATCTGGTGGTGCTAGTGTCCAGAGTAGTTCTGGTGGAACTTTTCCTCCGTTACGACACGTTCGCCGTCGAGGGAACTCGGTCATCGTTGGGTTGGTCGGTTAAGGTTAAATCGTTGACTAAAGCCTCATCGTAG 1446 50.48 MTSSPSSEQPPIPLPLKPIPGSYGFPIFGPIKDRYDYFYIQGREKFFRTRMAKYNSTVFRANMPPGPFISSNSKVIVLLDAHSFPILFDTTKVEKRNVLDGTYMPSVAFTGGIRACAFLDPSETEHSVLKRHFLKFLASRHDKFIPLFRSSVSEMFDKLEKELEKNNVASFNPVSDSASFDFIFRLLSDRSPDEKLSSEGPGLVDKWLSMQLAPLATLGLPKFLTCFEDLIIHTFRLPFALVKSAYSKLYDSFYESSGSFLDEAEKQGINREKACHNLVFLAGFNAYAGMKVLLPIILNWVGSAGEGLHLKLAGEIRAAVKEDGGLTFSALEKMSLLKSVVYEVLRIDPPVPYQYAKAKQDIVIESHDSAFKIKKGEMIFGYQPIATKDPKVFENPEEFVGDRFIGEKGEKLLKYVYWSNGRETEEPTTENKQCPARDLVVLVSRVVLVELFLRYDTFAVEGTRSSLGWSVKVKSLTKASS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5813008 5814548 - CcPI632755_02g005970.1 Cco02g0597 171354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0597 481 CDD CYP74 48 474 - -
Cco02g0597 481 Gene3D Cytochrome P450 11 481 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0597 481 FunFam Allene oxide synthase, chloroplastic 14 481 - -
Cco02g0597 481 Pfam Cytochrome P450 311 417 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0597 481 SUPERFAMILY Cytochrome P450 14 464 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0597 481 PANTHER CYTOCHROME P450 26 19 455 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cco02g0597 481 PRINTS E-class P450 group IV signature 371 385 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0597 481 PRINTS E-class P450 group IV signature 334 350 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0597 481 PRINTS E-class P450 group IV signature 387 405 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0597 Cco-Chr2:5813008 Cco10g1241 Cco-Chr10:25153510 2.10E-07 dispersed
Cco02g0597 Cco-Chr2:5813008 Cco02g0598 Cco-Chr2:5822504 1.30E-211 tandem
Cco02g0214 Cco-Chr2:2061968 Cco02g0597 Cco-Chr2:5813008 2.70E-111 transposed
Cco02g0597 Cco-Chr2:5813008 Cco08g1726 Cco-Chr8:28558404 6.00E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0597 K01723 - csv:101211574 860.136