Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0600 ATGAGAGAAGATCGAGGTGGAGGAGCCATGGTGATGGAGCGGCGAAATGGATTGAATCGGAAGCGATTTGGAGCTTATTTGCAGTCCGATCCGGCGATTTATACCGGTGATGATAATGATTTCTCTCCCCGGCATAGCAATGCCTCTGCTGCGACTAGTCCGGTGAATCACTACGACAAATCGCCGGCGAGTGGTGACGCTTCGCCTTATTTGATGTCGCCGTGGAATCAGTCCGCTTCGCCGTATTCGAAATCTCCGTGGATCGTTCGATCGGGTATGAATTTGTACGACGATGAATTTTATGCTCAGAATGGACTCATCGGCTCTCTGGTGCGAGAGGAAGGTCATGTGTATTCGTTGGCGGTGGCAGGGGATTTGTTGTACACTGGATCGGATAGCAAGAACATTCGTGTGTGGAAGAATTTAAAGGAGTTCACTGGATTTAAATCGAACAGTGGATTAGTGAAGTCGATTATCTTGTGTGGAGATAAGATTTTCACAGGACATCAAGACGGCAAGATTCGTATCTGGAAAGTTTCGTCCAAGAATCCGAAATCTCATAGCCGAATCGGAAGCTTACCGACGTTGAAGGAATTCGTCAAAAGCTCAATGAATCCAAGAAATTACGTGAAAGTCCGGCGCAATCGCAACGTCCTCCGTATAAAGCATTTCGACGCCATTTCCTCGATGAGCCTGAACGAGGAGTTAGGACTTTTATACTCCGGATCTTGGGACAAAACGATGAAGGTCTGGCGAATCGCAGATTCGAAATGCCTCGAATCAATCACCGCTCACGACGATGCCGTGAACGCCGTCGCATCAGGATTGGAAAGCCTCGTGTTCACCGGATCCGCGGACGGAACAGTGAAGGTCTGGCGGAGAGAGTTGCAGGGGAAAGGAACGAAGCATTTTCTGGTTCAGGTGTTGCTGAAGCAAGAAAATGCCATAACGGCGTTGGCTGTGAACCGGTCATCGGCGATTTTGTACTGCGGTTCATCAGACGGAGTGGTGAATTATTGGGAGAGCGAGAAGCATTTATCGCACGGCGGCATCCTCCGCGGCCATAAACTGGCTGTGCTGTGCTTAGCGACGGCCGGAAACTTGGTGTTCAGTGGATCGGCGGACAAAAACATCTGCGTGTGGAGGAGGGAAGAGAACAGCGGATCTCACACGTGTCTCTCTGTTCTGACCGGCCATTCAGGACCGGTCAAATGCTTAGCCGTTAAGGAAGATGAAGAAGAATCGCCATCGCCACCGGAAGAGGAAAGCAATGTCAAAAAGCTGTACGGCAGCTATAGCAACCGGCGGTGGATTGTGTACAGTGGTAGCCTCGACCGATCAGTGAAAGTGTGGCGCGTGTCGGAGAACGCGCCGGATCTGTTGAAACTCCGGGACGCGGATAGGCCGTACTTAAGCAAGAAATCGTAA 1428 50.56 MREDRGGGAMVMERRNGLNRKRFGAYLQSDPAIYTGDDNDFSPRHSNASAATSPVNHYDKSPASGDASPYLMSPWNQSASPYSKSPWIVRSGMNLYDDEFYAQNGLIGSLVREEGHVYSLAVAGDLLYTGSDSKNIRVWKNLKEFTGFKSNSGLVKSIILCGDKIFTGHQDGKIRIWKVSSKNPKSHSRIGSLPTLKEFVKSSMNPRNYVKVRRNRNVLRIKHFDAISSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELQGKGTKHFLVQVLLKQENAITALAVNRSSAILYCGSSDGVVNYWESEKHLSHGGILRGHKLAVLCLATAGNLVFSGSADKNICVWRREENSGSHTCLSVLTGHSGPVKCLAVKEDEEESPSPPEEESNVKKLYGSYSNRRWIVYSGSLDRSVKVWRVSENAPDLLKLRDADRPYLSKKS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5889563 5890990 + CcPI632755_02g006000.1 Cco02g0600 171357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0600 475 FunFam BnaA09g28200D protein 210 297 - -
Cco02g0600 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 391 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 MobiDBLite consensus disorder prediction 36 63 - -
Cco02g0600 475 Pfam WD domain, G-beta repeat 312 340 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Pfam WD domain, G-beta repeat 433 451 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Pfam WD domain, G-beta repeat 351 381 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Pfam WD domain, G-beta repeat 223 251 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Pfam WD domain, G-beta repeat 114 139 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Cco02g0600 475 PRINTS G protein beta WD-40 repeat signature 439 453 IPR020472 -
Cco02g0600 475 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Cco02g0600 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SUPERFAMILY WD40 repeat-like 109 457 IPR036322 GO:0005515(InterPro)
Cco02g0600 475 Gene3D - 91 214 IPR015943 GO:0005515(InterPro)
Cco02g0600 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 341 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 Gene3D - 277 464 IPR015943 GO:0005515(InterPro)
Cco02g0600 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 292 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 292 - -
Cco02g0600 475 Gene3D - 215 276 IPR015943 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 389 452 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 214 252 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 103 140 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 255 293 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 302 341 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 345 382 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 SMART WD40_4 141 178 IPR001680 GO:0005515(InterPro)
Cco02g0600 475 MobiDBLite consensus disorder prediction 40 59 - -
Cco02g0600 475 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 58 455 IPR045182 -
Cco02g0600 475 CDD WD40 114 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0600 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0600 Cco-Chr2:5889563 Cco02g1407 Cco-Chr2:26287206 6.40E-110 dispersed
Cco02g0600 Cco-Chr2:5889563 Cco08g1730 Cco-Chr8:28584830 2.70E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33