Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0609 ATGAGACAAAGAAATCCGATGGATGCCAAAGAAGAGAGGACAAATTTCTTTAGACTCAAAGCTGATGTGCCGGCGGGAAGAGTTTTTGTGGCAGTTCCGGCGGGTGTTGATCGTCTATTCGAATCGCTTCTCCGGAATTCGAGATACCGCTTTTGTGGAACTGGGTTACTCTTTTCTTCAGGTGATTTAGAAAGATTTTGTTGCGTTTCAGTAGCAATGAAGGCCATGGCGACCGTGCAGGATCTGATCGAGGAGGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTATTTTCGCGATTTCATACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATTTACCCCTAGCAATTCTATTAGTTTCTGCACTACGTATACTGTTCAATGAGGTAGAGTTCCGTAGAAAGGTCCGACCTATTCATCAACAGACATACTTATCTCACCTGGAGAAGAAGCAGTTATCTGTTAATGACTCGCGCCTGTCTTCAGTGCTTCCTCCACCAAGATGGAAAAGGAAAATTGATTCTCCTGCTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATATTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGACAAGGAGTTTCCTGTGCAGATACATGCGCTGATCATGGACGCCCTTGGTGAGATAGCAGTTAGGGTGAAAGAGATAAACCTAGTTGACTTGCTCACGAGGGATGTTGTTGATCTAGTAGGTGACCACTTGGACCTTTTTAGAAGAAACCAAGCTGCCATTGGTGTTGATGTTATGGGAACGCTGTCTTCTGAGGAGAGAGATGAAAGGTTGAAACACCATCTTATGGCTTCGAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAATGTCCTGTTGTTCGATCCATTGCTCGAGAACTTTTAACATGCTTGGTGATGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATAGTCCTTGCCACTAGAGCTGAGAATGACTCGGTGATAGGCGGTCAACAACAAACTTATTCTTCAGAGCATGACAAAGACCATTCTTCTACTGCTGGATTCGTGCATGATGAAGATTTGAACAAAAGGAACTCATCTTTAAATCCAGGGAATGGTTCAGAGCTCGCTAAAGTTAACAATAAAAAAGAAATAAGCTCAGATTACATGTTCCAGGATGAGCCTTTGCATCTGAGACATGGTGATTGGGGCCGTGCATTGAATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCTGAAAATCTTGAAAACATGTGGACTAAAGGACGGAACTATAAGAAGAAAGAAAATAAGATCATTAAAGTAGGAGATTCTGAGCCTATGGCTACAACAAAGAATTCTGGAACAGGTATCATGCAGCCTGCAACAACGAGGGAGGAAATGTTGACTGACAAGCATCATTCTTCTACTGGGCCAGAAGAAAAGGCAATAGTTAGGAGAACACCTGTAAGACATTCTGATCTCCTTATGACATCCAAACCAAGTGATGAGAACAAAATTGGTTGTCAGTCTTCTCTGGAACTTCAGAAGGATTCATCTATCGATGGGAAGTTTATTGCTAATGTATTAAAGGATGTTGATAATCTTACTCCTGCTACTAAAACTCCACTCAAGAGATCCAATAGTACTTCTGCCTTGAAAACTGAAGTTAGTGTAGAAAAGACTTCTACAGAAGGTGGAAGATCAATTATATCAGATTTCTATGGTCCCAATTTTGGCAAGCATGGTGAAGAGCCTCTTTCTAAGAGTGCCTCGGATATGGTGATCCAAAAAGAAGGACTACTTGTTCCCAAACTTAGGAGTCGGGTAATGGGTGCATACTTTGAGAAGCTTGGTTCAAAATCTTTTGCTGTGTATTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGGTACCGAAATTTTGAGCGCCTACATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATGCTTTTGTTCACCAACGTTGCATTCAACTTGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCGTTTGGAAAATCTTCCTCAGTGATGAGAACATTAGCAGTCAATGTGGATGACGCCGTGGATGACATTGTACGTCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTGATGAAGCTTGTGCCTCATCAAATTATGACCGGAAGTTTTCATTTAATTCAGCAGACTTAAGCAGACATGTTTCTGCACAATATAATTTAGAGATAGCTAATAACATTTCTGACGAGGAAGGTGAGCGAATTGAAAGTCAAAATCGTGAAAAAGTTAGTGGATGGCATTCAGACAATGAATTAAACTCTAAGAGCTTTCCCCCTCGTGTGATCAAACGTGGTGAAGAGTCAGATAAATTAGTTGTCGACAAGAAGAATGATCTAGAATTGAGGTCTGGGGCCAGCCATGGAGGATTTTCACAAACTTCGTATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGCGTACCTCTTCTAAATCTGGTTGACAAGATATTTCAGCTTAACAGGAGAGGCTGGATAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGACGACTGGATTGTCAGGCAAATACACTGGCTACGGAGGGAGGACATCATTGCTCAGGGTATTCGATGGGTCCAAGATGTTCTCTGGCCCAATGGAATATTCTTCATACAATTGAGGAATGCTCAAAGTGAAGATGATCATTCTCAATCTACTACTAGCCGAGCTGATGGAAGCAAGATCCCCAAGCCTGGATCTTTTGAGCTGCAGCTCGAGGCTGCTCGCAGAGCTAGCGATGTCAAGAAAATGCTTTTTGCTGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCACAAGCAATACAAAAGATGTGCAAAAGATATTTACTACTTCACTCAGTCTACCATCTGTGTGAAGCAACTTGGGTATGGATTACTTGAACTATTACTCGTATCACTTTTCCCCGAGCTACGGAATTTAGTTTTGGAGATTCATGACAAGTCGCACGTCTCGCAACCAGTTTAG 3327 41.93 MRQRNPMDAKEERTNFFRLKADVPAGRVFVAVPAGVDRLFESLLRNSRYRFCGTGLLFSSGDLERFCCVSVAMKAMATVQDLIEEAKLRTVWWALCIFAISYFLTHTSKSMWMNLPLAILLVSALRILFNEVEFRRKVRPIHQQTYLSHLEKKQLSVNDSRLSSVLPPPRWKRKIDSPAVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPVQIHALIMDALGEIAVRVKEINLVDLLTRDVVDLVGDHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQCPVVRSIARELLTCLVMQPLMNFASPGCINELIECIVLATRAENDSVIGGQQQTYSSEHDKDHSSTAGFVHDEDLNKRNSSLNPGNGSELAKVNNKKEISSDYMFQDEPLHLRHGDWGRALNAATQRRTEVLMPENLENMWTKGRNYKKKENKIIKVGDSEPMATTKNSGTGIMQPATTREEMLTDKHHSSTGPEEKAIVRRTPVRHSDLLMTSKPSDENKIGCQSSLELQKDSSIDGKFIANVLKDVDNLTPATKTPLKRSNSTSALKTEVSVEKTSTEGGRSIISDFYGPNFGKHGEEPLSKSASDMVIQKEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDAFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPDEACASSNYDRKFSFNSADLSRHVSAQYNLEIANNISDEEGERIESQNREKVSGWHSDNELNSKSFPPRVIKRGEESDKLVVDKKNDLELRSGASHGGFSQTSYHMEDPEGMPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDIIAQGIRWVQDVLWPNGIFFIQLRNAQSEDDHSQSTTSRADGSKIPKPGSFELQLEAARRASDVKKMLFAGAPTPLVSLIGHKQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSLFPELRNLVLEIHDKSHVSQPV 1108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5972108 5985058 - CcPI632755_02g006090.1 Cco02g0609 171366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0609 1108 SMART PXA_3 177 360 IPR003114 -
Cco02g0609 1108 SMART PX_2 638 746 IPR001683 GO:0035091(InterPro)
Cco02g0609 1108 MobiDBLite consensus disorder prediction 370 409 - -
Cco02g0609 1108 Pfam PX domain 668 745 IPR001683 GO:0035091(InterPro)
Cco02g0609 1108 Pfam PXA domain 177 354 IPR003114 -
Cco02g0609 1108 Pfam Sorting nexin C terminal 934 1068 IPR013937 -
Cco02g0609 1108 Gene3D - 641 755 IPR036871 GO:0035091(InterPro)
Cco02g0609 1108 MobiDBLite consensus disorder prediction 575 594 - -
Cco02g0609 1108 ProSiteProfiles PXA domain profile. 177 360 IPR003114 -
Cco02g0609 1108 CDD PX_SNX19_like_plant 640 744 - -
Cco02g0609 1108 PANTHER PX SERINE/THREONINE KINASE PXK 78 1103 IPR051837 -
Cco02g0609 1108 MobiDBLite consensus disorder prediction 886 905 - -
Cco02g0609 1108 ProSiteProfiles PX domain profile. 638 750 IPR001683 GO:0035091(InterPro)
Cco02g0609 1108 SUPERFAMILY PX domain 646 749 IPR036871 GO:0035091(InterPro)
Cco02g0609 1108 MobiDBLite consensus disorder prediction 375 397 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0609 K17925 - - csv:101222929 1880.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0609 Cco-Chr2:5972108 Cco09g0200 Cco-Chr9:1805348 2.80E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34