Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0611 ATGGGAGAGACCTTGGCCATGGATTCTACCTTCATTCAACCCATCGAGCACCGCCCCAAGCTCGAACCCCTCGACTCCCTTGACGAACAAGTTCCAACCATAGATCTCTCTATCTCCCTCTCTCGCACCACCCATCAGCTCGTCTCTGAAATAGCCTCTGCTTGCCAGAACTGGGGTTTCTTCCAGGTAATCAACCATGGAGTTCCCCACGAGCTGCTCGCGCGTATTGAAAAAGCTGCCAAGTTGTTTTTTGATCAGCCAATGGAGGAGAAGAGGAAGGTGAAGAGAGATGCAGCTAATGCTATGGGGTTTCATGACGGTGAGAATACCAAAAACGTTAGGGATTGGAAGGAAGTGTTTGACTTCTTGGTTAAGGATGGGACGTTGATTCCGGCTTCGCATGAACCAAATGACAAGGAATTGAGGGTATTGTGTAATCAGTGGCCGCAATATCCTTCTGGGTTTAGGGAAACATGCGAGGAGTATGCAAGAGAGTTGGAATTGCTAGCTCAGAAGCTACTGAGGCTGATTTCTTTGAGTCTAGGCCTAGCTGGTGCTGATGGATTGAAGGGCTATTTCAACGATGAGCAAACGAGCTTGGTGAGGTTGAATCACTATCCTCCATGCCCGTCTCCGGATCTCGTGCTTGGCGTTGGCCGTCACAAAGATGCTGGTGCCTTGACAATCCTTGCTCAAGATGGTGTTGGAGGGCTGCAAGTGAAGAGAAAATTAGATGGAGAATGGATTCCTGTCAAACCAATCCCAAATGCATATATTGTCAACATTGGTGATGTTGTTCAAGTTTGGAGCAATGACAAATATGAAAGTGTGGAGCACAGGGTGGTGGTGAATACTGAGAAAGAAAGGTTTTCTTTTCCATTCTTCTTCTTTCCAGCTCACCATATGATGGTGAAACCATTGGAGGAGCTTGTGAATGAGCAAAACCCACCAAAATACAGAGAATACAACTTCGGAAAGTTCTTTGCTTCTAGAAACCGCAGTGATTTCCAGAAGCAAAAAGTGGAAAACATCCAAATTGACCATTTTAGGCTGCCTTTGTGA 1062 46.33 MGETLAMDSTFIQPIEHRPKLEPLDSLDEQVPTIDLSISLSRTTHQLVSEIASACQNWGFFQVINHGVPHELLARIEKAAKLFFDQPMEEKRKVKRDAANAMGFHDGENTKNVRDWKEVFDFLVKDGTLIPASHEPNDKELRVLCNQWPQYPSGFRETCEEYARELELLAQKLLRLISLSLGLAGADGLKGYFNDEQTSLVRLNHYPPCPSPDLVLGVGRHKDAGALTILAQDGVGGLQVKRKLDGEWIPVKPIPNAYIVNIGDVVQVWSNDKYESVEHRVVVNTEKERFSFPFFFFPAHHMMVKPLEELVNEQNPPKYREYNFGKFFASRNRSDFQKQKVENIQIDHFRLPL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5998751 6000972 + CcPI632755_02g006110.1 Cco02g0611 171368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0611 353 Pfam 2OG-Fe(II) oxygenase superfamily 199 298 IPR044861 -
Cco02g0611 353 Pfam non-haem dioxygenase in morphine synthesis N-terminal 31 150 IPR026992 -
Cco02g0611 353 SUPERFAMILY Clavaminate synthase-like 11 336 - -
Cco02g0611 353 Gene3D - 2 338 IPR027443 -
Cco02g0611 353 PRINTS Isopenicillin N synthase signature 286 304 - -
Cco02g0611 353 PRINTS Isopenicillin N synthase signature 51 68 - -
Cco02g0611 353 PRINTS Isopenicillin N synthase signature 221 242 - -
Cco02g0611 353 FunFam Gibberellin 20 oxidase 1 4 337 - -
Cco02g0611 353 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 298 IPR005123 -
Cco02g0611 353 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 8 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0611 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1828 Cco-Chr1:30889973 Cco02g0611 Cco-Chr2:5998751 7.90E-40 dispersed
Cco01g1829 Cco-Chr1:30893693 Cco02g0611 Cco-Chr2:5998751 7.10E-36 dispersed
Cco02g0611 Cco-Chr2:5998751 Cco07g0435 Cco-Chr7:4994396 2.80E-54 dispersed
Cco02g0611 Cco-Chr2:5998751 Cco02g0613 Cco-Chr2:6038510 3.00E-120 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g494 . . . . . . . . . Cmo11g01335 . . . . . Cpe04g00259 . . . . . . . . Cla02g00570 Cam02g0600 Cec02g0600 Cco02g0611 Clacu02g0596 Cmu02g0594 . . . . . . . . Cme01g00017 . . . . Bpe15g00885 . . . . . . . . Car11g01076 . . . . . . . . . . . . . . . . . Lsi11g01040 . Chy01g00022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84