Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0612 ATGCAAAAACTTTTGCTACCATTTTTCCTTCTCATTTCCGTCTCTTTGTCTTCCCAAACACAAAGCTCAATTCTCCTCCATGATGACTCCCAAGGGAGCAAATCACAGTTTGTGCTCGTCCATGGCGCTTGCCTGGGTGCCTGGTCTTGGTACAAGGTCACAACCTTGTTGCGAACCGCTGGTCACAATGTCACCGCACTCGACATGGCTGCTTCCGGGATCAACCCGACGCAAGCCGAGTCATTGACATCGCTTACCGAGTACTACCAGCCATTGTTGAGGTTCATGGAAGCCGTAGCAACCGACGACAAGATCGTTCTCGTCGGACACAGCCTAGGCGGCCTCGGGATCTCGATGGCCATGGAGAGATTCCCTGAGAAAATCTCTGTTGCCATTTTTGTAACTGCAGCCATGCCTGGTCCAATCTTGGGGCTTTCTTCCATACAGGAACAGAAGAGAATACTTGGAATCTATAGTCGCTTCTACACAGAGGAGAAATCAAAAGCTTCTGATTCAGATCTCTTCCTATTTTCCCAAGAAGATTTAGAAACCAAGCTTTTCCCACTATCTCCACCTGAGGATGTGACATTGGCATCAACATTGGTGAGGCCCCAAGCAATGTTTGGTCTATTGGAGTCAATGAAGGAGCTGCAACTAAGCAAAGAGAAATATGGGTCAGTGAAAAGGGCTTTCATTATATCAGAGAAGGACCAAATGACCACCAAGATCATGGTGTGGGCAATGCTCATTTTAAACAGGCCTGATCGTGTGGCTGAGGTTAAAGGCTCAGATCATATGGTCATGACTTCAAAGCCTCTTGAACTTGCTCAACAACTCTCCACCATAGCTCAAGAATATGCTTCTTCTTCTTCTTCTTCCACTTATATTGATATGTAA 897 46.38 MQKLLLPFFLLISVSLSSQTQSSILLHDDSQGSKSQFVLVHGACLGAWSWYKVTTLLRTAGHNVTALDMAASGINPTQAESLTSLTEYYQPLLRFMEAVATDDKIVLVGHSLGGLGISMAMERFPEKISVAIFVTAAMPGPILGLSSIQEQKRILGIYSRFYTEEKSKASDSDLFLFSQEDLETKLFPLSPPEDVTLASTLVRPQAMFGLLESMKELQLSKEKYGSVKRAFIISEKDQMTTKIMVWAMLILNRPDRVAEVKGSDHMVMTSKPLELAQQLSTIAQEYASSSSSSTYIDM 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6010598 6013493 + CcPI632755_02g006120.1 Cco02g0612 171369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0612 298 Gene3D alpha/beta hydrolase 30 287 IPR029058 -
Cco02g0612 298 SUPERFAMILY alpha/beta-Hydrolases 31 282 IPR029058 -
Cco02g0612 298 PANTHER METHYLESTERASE FAMILY MEMBER 33 286 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Cco02g0612 298 Pfam Alpha/beta hydrolase family 37 277 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0612 Cco-Chr2:6010598 Cco03g0804 Cco-Chr3:8646491 2.30E-65 dispersed
Cco02g0612 Cco-Chr2:6010598 Cco02g0617 Cco-Chr2:6049634 2.00E-48 proximal
Cco02g0612 Cco-Chr2:6010598 Cco04g1412 Cco-Chr4:29526042 7.00E-46 wgd
Cco02g0612 Cco-Chr2:6010598 Cco09g1973 Cco-Chr9:33894496 4.60E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g491 . . . . . . . . . Cmo11g01336 Cma02g00433 . Car02g00288 . . . . . . . . . . . Cla02g00571 Cam02g0601 Cec02g0601 Cco02g0612 Clacu02g0597 Cmu02g0595 Cre02g0924 . . . . . . . Cme01g00018 . . . . . . . . Sed01g0330 Cmo02g00435 . . . Car11g01077 . . . Bhi10g02066 Tan05g1380 Cmetu11g1580 . Hepe08g1056 . . . . . . . . . Lsi11g01039 . Chy01g00023 Cme11g00501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112