Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0617 ATGGAGAAGAACAAGATCAAGAACAAGTACCTGTTACTACTAATTCTGGTGTCTCTCTTCTTCCAACTGTCCAATACTTCTCAGCCGCATTATCACAAACAATTTGTGTTCATCCACGGATCCTGCCATGGCGCCTGGTCCTGGTTCAAACTCCTCCCACTCCTCGAATCCTCTGGCCACCACGTCACCGCCCTCGACTTGCCCACCTCCGGAATCGACCTCCGGCAGCCGGACACCGTCCGATCCATTTCCCAATACTTCCAGCCTCTGACTGAGTTCATGTCGGCTCTCCCTCGGCACCAAAAGGTGATCCTCGTCGGGCATAGCCTCGGCGGATTGGCCGTCGCGAAAGCCATGGAGGAGTTTCCGGCGAGGATTTCCGCGGCCGTGTTCGTCACTGCTTCGATGCCCGGCCCAGCCCTGAACATATCGATGATTTATGGGAAGGTGTTCGAGAGGAATGAATCGATGATGGATAGCGTTTACTCGTACGGCGACGGCCCCAATCGACCTCCCACAGCCTTCGTCTTTGGGCCGCGCTTTTCGGCTTCCAAAGTTTATCAGCTCAGCCCACCCGAGGATTTAACACTGGCGACATTGTTAATGAGGCCAGTTCCATGTAATAGAAATTTTCAACGGTGGATGATTGAGAAGAACCCACCTGATCGTGTGGTCAAGATCGAAGGATCAGATCATATGGTGATGATGTCTAAACCATTGGAGTTGTGGGCCCATCTTGAACTCATTGCTCAATACTACCATTAG 765 52.16 MEKNKIKNKYLLLLILVSLFFQLSNTSQPHYHKQFVFIHGSCHGAWSWFKLLPLLESSGHHVTALDLPTSGIDLRQPDTVRSISQYFQPLTEFMSALPRHQKVILVGHSLGGLAVAKAMEEFPARISAAVFVTASMPGPALNISMIYGKVFERNESMMDSVYSYGDGPNRPPTAFVFGPRFSASKVYQLSPPEDLTLATLLMRPVPCNRNFQRWMIEKNPPDRVVKIEGSDHMVMMSKPLELWAHLELIAQYYH 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6049634 6051313 + CcPI632755_02g006170.1 Cco02g0617 171374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0617 254 PANTHER METHYLESTERASE FAMILY MEMBER 209 251 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Cco02g0617 254 Gene3D alpha/beta hydrolase 30 254 IPR029058 -
Cco02g0617 254 Pfam Alpha/beta hydrolase family 35 242 IPR000073 -
Cco02g0617 254 SUPERFAMILY alpha/beta-Hydrolases 35 247 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0617 Cco-Chr2:6049634 Cco09g1973 Cco-Chr9:33894496 7.70E-62 dispersed
Cco02g0612 Cco-Chr2:6010598 Cco02g0617 Cco-Chr2:6049634 2.00E-48 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g484 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00573 Cam02g0604 Cec02g0604 Cco02g0617 Clacu02g0599 Cmu02g0597 Cre02g0927 . Cone8ag1161 . . . Csa07g00793 Chy11g00429 Cme01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112