Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0629 ATGGGGAGGATCCGTTGCTTCTTGGATATCAGTATTGGAGGTGATCTTGAGGGTAGAATTTTGGTGGAGCTTTACGACGATGTAGTGCCTAAAACAGCTGAGAATTTCAGGGCTCTTTGCACTGGCGAGAAGGGCATTGGTCCACATACCGGCGTTCCCCTTCATTTCAAGGGGTCCTGTTTTCACCGTGTCATAAAAGGATTCATGGTACAAGGTGGAGATATTTCTGCTGGAGATGGTACTGGTGGAGAGTCTATATATGGCTTGAAATTCGATGACGAAAATTTTGAGGTTAAACATGAAAGGAAAGGAATGTTGTCTATGGCTAATTCTGGTCCCAACTCAAATGGGTCCCAATTTTTTATCACAACTACTCGCACTCCTCATTTAGATGGGAAACATGTAGTGTTTGGGAAGGTTTTGAAAGGAATGGGTGTTGTTCGTTCAATTGAGCATGTTACAACCGGTGAAAATGACCGTCCTACTGCTGATGTCATTATTGCGGATTGTGGAGAAATTCCTGAGGGAGCAGACGATGGAATTTCAAACTTTTTCAATGATGGGGATACTTTTCCTGATTGGCCAGCTGACCTAGAACAAAGCTCTGATGAACTTGAATGGTGGGTGAATGCAGTTGATTCTGTGAAGGTTTTTGGCAATGAGCATTACAAGAAGCAAGACTACAAGATGGCTCTCAGAAAGTATCGGAAGGCTTTACGCTACCTTGATATCTGCTGGGAAAAAGAAGGAATCGATGAAGAGAAGAGTTCATATCTTAGAAAAACCAAATCACAGATATTCACAAACAGTTCGGCATGTAAATTGAAGTTAGGAGATCTAAAAGGAGCACTGTTAGACACTGATTTTGCAATGCGTGACGGAGACAACAATGTTAAGGCTTTGTTTCGCCAAGGTCAGGCATATATGGCTCTTAATGACATCGATTCTGCTGCCGAAAGTTTCAAGAAGGCATCAGATTTGGAACCAAATGATGCTGCCATAAAGAAAGAGCTTGCTGCCGCGAGGAAAAAGATTGCTGACAGACGTAATCAAGAAAGAAAGGCATATAGCAAGATGTTCCAGTAG 1086 42.45 MGRIRCFLDISIGGDLEGRILVELYDDVVPKTAENFRALCTGEKGIGPHTGVPLHFKGSCFHRVIKGFMVQGGDISAGDGTGGESIYGLKFDDENFEVKHERKGMLSMANSGPNSNGSQFFITTTRTPHLDGKHVVFGKVLKGMGVVRSIEHVTTGENDRPTADVIIADCGEIPEGADDGISNFFNDGDTFPDWPADLEQSSDELEWWVNAVDSVKVFGNEHYKKQDYKMALRKYRKALRYLDICWEKEGIDEEKSSYLRKTKSQIFTNSSACKLKLGDLKGALLDTDFAMRDGDNNVKALFRQGQAYMALNDIDSAAESFKKASDLEPNDAAIKKELAAARKKIADRRNQERKAYSKMFQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6195441 6200309 + CcPI632755_02g006290.1 Cco02g0629 171386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0629 361 Gene3D - 2 179 IPR029000 -
Cco02g0629 361 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
Cco02g0629 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cco02g0629 361 SMART tpr_5 212 245 IPR019734 GO:0005515(InterPro)
Cco02g0629 361 SMART tpr_5 298 331 IPR019734 GO:0005515(InterPro)
Cco02g0629 361 CDD cyclophilin_ABH_like 5 171 - -
Cco02g0629 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Cco02g0629 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 Gene3D Tetratricopeptide repeat domain 206 361 IPR011990 GO:0005515(InterPro)
Cco02g0629 361 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Cco02g0629 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Cco02g0629 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515(InterPro)
Cco02g0629 361 SUPERFAMILY TPR-like 209 354 IPR011990 GO:0005515(InterPro)
Cco02g0629 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cco02g0629 361 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Cco02g0629 361 FunFam peptidyl-prolyl cis-trans isomerase D 210 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0629 K05864 - - csv:101208688 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0629 Cco-Chr2:6195441 Cco09g0713 Cco-Chr9:6493163 7.90E-60 dispersed
Cco05g2961 Cco-Chr5:37123614 Cco02g0629 Cco-Chr2:6195441 7.40E-48 transposed
Cco08g1474 Cco-Chr8:26599483 Cco02g0629 Cco-Chr2:6195441 1.70E-42 transposed
Cco02g0629 Cco-Chr2:6195441 Cco09g1961 Cco-Chr9:33632575 1.10E-183 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61