Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0637 ATGGAGAAATCTGTTCTTCTCCGCTCTCTCACCTGTTCCTCCTTAGTCTGCGACAGAATCTTCTTCCGCTCAGCTCACCGGTTGTCTCCCTCTACATTGCCGCCATGTTCATCCTTTGTTTCCAGGAAACTACACCGTCTCAATCCCAGCTTCAGCAGACGCTCACTTCCCCATCGTCAATTGAGATTACTGCCGTCTTATTCGAAATCTTGTTCATTTCACTTCAGAAAGCAGTTCTCGTCTCTGGCTCCGCGTGCTGTTGCTTCTCCCCCTGCTCACTCCCCTCCAGAGTTTGCAGAAGTGTCCAATGAGGTTGCTCAGAAGCTTGGATTCGAGAAGGTCTCTGAGGAATTTATTGGTGAGTGCAAATCAAAAGCTGTGCTTTTTAGACATAAGAAGACTGGTGCGGAGGTGATGTCCGTGTCAAATGATGATGAGAATAAGGTCTTTGGAATCGTATTCCGTACACCTCCGAGTGATTCTACTGGAATTCCACACATATTAGAACACAGTGTATTGTGTGGATCGAGGAAGTACCCAGTGAAGGAGCCTTTTGTTGAATTATTGAAAGGAAGCTTACATACATTCTTAAATGCATTTACATATCCTGATAGGACATGCTACCCAGTTGCTTCAACAAATACAAAGGATTTTTATAATCTTGTTGATGTATACTTGGATGCGGTCTTCTTTCCTAAGTGTGTGGAGGACTTTAAGACGTTTCAACAAGAGGGTTGGCATTATGAACTAAACGATCCATCAGAAGACATATCTTATAAAGGGGTGGTGTTCAATGAAATGAAAGGAGTTTACTCCCAGCCAGACAATATCCTAGGACGAGTTACTCAGCAGGCTCTTTTCCCGGACAATACATATGGAGTTGATAGTGGAGGAGACCCACGAGTTATTCCCAAGCTTACATTTGAGGAATTCAAGGAATTTCACAGTAAGTTTTACCACCCAGGAAATTCAAGGATCTGGTTTTATGGAGATGATAATCCAGTTGAACGTCTGCGCATTCTGAAAGAGTATCTAGATATGTTTGATGCAAGTCCTGTTTCCAACCAGTCTAAGATTGAGCAACAAAGGCTATTCTCAGAGCCGGTTAGGATTGTTGAGAAGTATCCTTCTGGTGATGGAGGTGATTTGAAAAAAAAGCATATGGTCTGCGTCAATTGGTTGCTTTCTGAAAAGCCCTTGGACTTGGAAACTGAGCTTACTCTTGGGTTCTTAGACCATCTTATGCTGGGAACTCCTGCCTCTCCACTGAGGAAAATCTTACTGGAGAGTGGTCTAGGAGATGCCATTGTTGGCGGTGGGATTGAAGATGAGCTCTTACAACCGCAGTTTAGTATTGGATTGAAGGGTGTTTTGGATGATGACATCCCAAAAGTAGAAGAATTGATTCTAAATACCTTTAAGAAATTAGCAGAGGAAGGTTTTGATAATGATGCAGTAGAGGCTTCCATGAATACCATTGAGTTCTCCCTGCGGGAAAATAACACTGGATCTTTCCCTCGAGGCTTGTCACTTATGCTTCGATCCATTGGTAAATGGATATATGATATGGATCCATTTGAACCATTGAAGTATGAAGAACCACTGAAGGCCTTGAAAGCCAGAATAGCTGCAGAAGGACCCAAAGCTGTCTTTTCCCCTTTGATAGAGAAATTCATCTTGAACAACCCTCATCGTGTAACTATCGAGATGCAGCCTGATCCAGAGAAAGCTTCTCGTGATGAAGCAGCTGAAAAAGAAATCTTGCAGAAAGTTAGAGAAAGCATGACTGAAGAAGATCTTGCTGAATTAGCACGTGCTACACAGGAATTACGGCTGAAACAGGAAACACCTGATCCACCAGAAGCTTTAAAATGTGTTCCATGCCTTTGCCTTGAAGATATTCCTAAAGAACCTATTCGTGTTCCAACAGAAATCGGGAATGTTAATGGAGTAACCGTCTTACAACATGAACTCTTCACAAATGATGTTCTTTATTCTGAAGTTGTTTTCGATATGAGTTCACTGAAGCAGGAGCTTCTTCCTTTGGTACCTTTATTTTGTCAATCATTGTTAGAGATGGGCACAAAAGACTTGACTTTTGTGCAACTTAATCAATTAATTGGAAGGAAGACTGGTGGGATATCAGTTTATCCATTTACGTCATCTATACGTGGCAATGACAACGCATGTACTCATATGATTGTGAGAGGCAAGGCTATGTCAGGATGTGCTGAAGACTTGTTCAACCTGATGAACTGCATTCTTCAAGAAGTACAGTTTACTGATCAGCAGCGTTTTAAACAGTTTGTATCTCAGAGCAAATCACGAATGGAGAATCGGTTAAGGGGTAGTGGCCATGGAATTGCTGCTGCTAGGATGGATGCAAAGTTGAACAGTGCAGGGTGGATCTCTGAACAAATGGGTGGTCTCAGTTATCTGGAATTCCTGCAAACTCTTGAAGAGAAAGTTGATCAAAACTGGGTCGAAATTTCTTCATCACTTGAGGAAATCCGCCAATCCTTACTTTCAAGGAAGAATTGCCTAGTCAACGTTACTGCTGATGGCAAAAATCTCATAAAGTCAGAGAAGTTCATCGGCAAATTTCTTGATTTGCTTCCTAATCAACCTGTCATTAAGAACAGCACTTGGAATGCCCGGCTTTCTTCAGATAATGAAGCCATCGTGATACCTACTCAGGTTAATTATGTTGGAAAAGCAGCTAACATTTATGAAACTGGCTATCAACTTGATGGAAGTGCCTATGTTATTTCAAAGTTCATTAGTAATACTTGGCTGTGGGATCGTGTTAGAGTAAGTGGAGGTGCTTATGGAGGGTTTTGTGATTTTGATACTCATTCAGGAGTATTCTCCTTTCTATCTTATCGTGACCCAAATTTGTTAAAGACACTTGATGTATATGATGGAACCGTTGATTTTCTACGTGAATTGGATTTGGATGACGATACTCTAGCAAAAGCCATAATTGGAACCATTGGAGATGTTGATTCATACCAGCTTCCTGATGCTAAAGGTTATAGTAGCTTGTTGCGGTATTTATTAGGAATTACAGAAGAAGAAAGGCAAAGGAGAAGGGAAGAGATTTTATCAACCAGCTTGAAGGACTTCAAGAACTTCGCCGACGCACTCGAGGCAGTTAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGACGTCGAAACTGCACACAGCGAACGCCCAGAAGTTGGAGGATTCGTATTTGTAAAAGCTGCCCAAAATCTTCGCAACGACTTCGTTAGATGCAATAAACAAAGTAAAAATGCCGCTTCGGAGATTGACGAATCTCAGCCGTTGAAACAAGATCGCCGAAATGGTTTTGGAGCGGCCATGAAAGCAGAGTTCAAGCTGGAGGTAGAGACGGCGATGGGCGATTGCAAGCGCGTTGTGGTGATGACGGCGGCGAATAATGCAGGTTGCATGTCTAAGAGAAGGAGAATTGCCAGTTCGTCGGAGAGTTTGCGGCCCTCGACGTCTCGGTCTGACCTCCACGACCGTTGTTTGTGGTTGGAGAATGCGACGACGTCTCTGTCGCGTTTGGAGAAGAAGAATTCCCTTGGCATTGTTGCTGGAGGTGAGATGAGTGATGGTTTTTCAGAGGATCAGTTTCCGGTTTATTGTAGCTTCAGTAACGACTGCGGGAAGGCAACCGCCGTGAAATTTGAAGATCTGGAGCTGCAGACCAAGAGCTTCGAAACCGTAGAGTCGATTCGTGTTAACGGCATTCAAAGAGAGAGCACTCCAACGAGCAATCTCCTGGGAGATTCCGACGAAATGGACTCTCCGGCAACGAACTTCTTGACTGAAAAACAAAAGCCAACGGATCGTCCGATGAAGACACCACCGATCTCTGAGATTGAAGATTTCTTCGCCGAGGCTGAGAAGTACGAACAGAAGCGTTTCTCAGAAAAGTACAATTTCGATATAGTGATGGATGTACCAGTAAAAACAGGATATGATTCTCTTAGCTTAAACTACCTTGGAGGAGAAAATGATGATGAAGAACAAAGAAGCAAGAAGAAGAAGAAGGAGAAGAAGCAATTCTATGGGGACCATCCAGAGGGTTAA 4110 42.97 MEKSVLLRSLTCSSLVCDRIFFRSAHRLSPSTLPPCSSFVSRKLHRLNPSFSRRSLPHRQLRLLPSYSKSCSFHFRKQFSSLAPRAVASPPAHSPPEFAEVSNEVAQKLGFEKVSEEFIGECKSKAVLFRHKKTGAEVMSVSNDDENKVFGIVFRTPPSDSTGIPHILEHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDFKTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRVTQQALFPDNTYGVDSGGDPRVIPKLTFEEFKEFHSKFYHPGNSRIWFYGDDNPVERLRILKEYLDMFDASPVSNQSKIEQQRLFSEPVRIVEKYPSGDGGDLKKKHMVCVNWLLSEKPLDLETELTLGFLDHLMLGTPASPLRKILLESGLGDAIVGGGIEDELLQPQFSIGLKGVLDDDIPKVEELILNTFKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDMDPFEPLKYEEPLKALKARIAAEGPKAVFSPLIEKFILNNPHRVTIEMQPDPEKASRDEAAEKEILQKVRESMTEEDLAELARATQELRLKQETPDPPEALKCVPCLCLEDIPKEPIRVPTEIGNVNGVTVLQHELFTNDVLYSEVVFDMSSLKQELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSIRGNDNACTHMIVRGKAMSGCAEDLFNLMNCILQEVQFTDQQRFKQFVSQSKSRMENRLRGSGHGIAAARMDAKLNSAGWISEQMGGLSYLEFLQTLEEKVDQNWVEISSSLEEIRQSLLSRKNCLVNVTADGKNLIKSEKFIGKFLDLLPNQPVIKNSTWNARLSSDNEAIVIPTQVNYVGKAANIYETGYQLDGSAYVISKFISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTVDFLRELDLDDDTLAKAIIGTIGDVDSYQLPDAKGYSSLLRYLLGITEEERQRRREEILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVETAHSERPEVGGFVFVKAAQNLRNDFVRCNKQSKNAASEIDESQPLKQDRRNGFGAAMKAEFKLEVETAMGDCKRVVVMTAANNAGCMSKRRRIASSSESLRPSTSRSDLHDRCLWLENATTSLSRLEKKNSLGIVAGGEMSDGFSEDQFPVYCSFSNDCGKATAVKFEDLELQTKSFETVESIRVNGIQRESTPTSNLLGDSDEMDSPATNFLTEKQKPTDRPMKTPPISEIEDFFAEAEKYEQKRFSEKYNFDIVMDVPVKTGYDSLSLNYLGGENDDEEQRSKKKKKEKKQFYGDHPEG 1369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6307203 6328823 + CcPI632755_02g006370.1 Cco02g0637 171394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0637 1369 FunFam Presequence protease 1 875 1056 - -
Cco02g0637 1369 SUPERFAMILY LuxS/MPP-like metallohydrolase 362 627 IPR011249 GO:0046872(InterPro)
Cco02g0637 1369 SUPERFAMILY LuxS/MPP-like metallohydrolase 887 1064 IPR011249 GO:0046872(InterPro)
Cco02g0637 1369 MobiDBLite consensus disorder prediction 1344 1369 - -
Cco02g0637 1369 Pfam PreP C-terminal domain 891 1063 - -
Cco02g0637 1369 Gene3D - 355 592 - -
Cco02g0637 1369 Pfam Cyclin-dependent kinase inhibitor 1298 1333 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
Cco02g0637 1369 SUPERFAMILY LuxS/MPP-like metallohydrolase 110 352 IPR011249 GO:0046872(InterPro)
Cco02g0637 1369 SUPERFAMILY LuxS/MPP-like metallohydrolase 629 883 IPR011249 GO:0046872(InterPro)
Cco02g0637 1369 MobiDBLite consensus disorder prediction 1340 1369 - -
Cco02g0637 1369 Pfam Insulinase (Peptidase family M16) 158 235 IPR011765 -
Cco02g0637 1369 Pfam Peptidase M16 inactive domain 305 491 IPR007863 -
Cco02g0637 1369 Gene3D - 602 1056 - -
Cco02g0637 1369 FunFam presequence protease 1, chloroplastic/mitochondrial 94 353 - -
Cco02g0637 1369 FunFam Presequence protease, mitochondrial 356 593 - -
Cco02g0637 1369 PANTHER PRESEQUENCE PROTEASE 105 1073 - GO:0004222(PANTHER)|GO:0005739(PANTHER)|GO:0009507(PANTHER)|GO:0016485(PANTHER)
Cco02g0637 1369 Gene3D - 637 886 - -
Cco02g0637 1369 Pfam Peptidase M16C associated 570 819 IPR013578 GO:0006508(InterPro)
Cco02g0637 1369 SMART M16C_assoc_2 570 819 IPR013578 GO:0006508(InterPro)
Cco02g0637 1369 Gene3D - 91 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0637 K06972 - - csv:101206839 2087.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0637 Cco-Chr2:6307203 Cco02g1373 Cco-Chr2:25929259 4.70E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34