Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0638 ATGGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGTCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCGTTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCAATTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGATAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTGGCAAAAGAAATACCAAATCATCAGGGCAATCCAAGGCAAATAATTCTGAGGATAAAGGAGATAACGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTGTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGATACCTTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGTCGCAACAACCTTCTTCGGCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCTAGTAATCAATTGAAGTATCAGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTACAGGATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAGTCAAGCACCAAATGCCCTTGTATCTCCTATTGATGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCCAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGCGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTATTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATAAGATATCAACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCATGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCAGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCAGCTTGA 2856 42.93 MAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPVEPLPGIRRTYQRRDLLNRIYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSGKRNTKSSGQSKANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGKKLAKQKGFRHFPIRNGVCHGGPACSNPHSYLLLLQDTLIKALSTSAIRNDFSNFPPPSQQPSSADPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYQSQNQSPQPNPGFSRQGQSYTQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVQDSNQLNNQAGIQRQGAQSQAPNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDAA 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6340296 6347207 + CcPI632755_02g006380.1 Cco02g0638 171395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0638 951 Gene3D Tetratricopeptide repeat domain 587 743 IPR011990 GO:0005515(InterPro)
Cco02g0638 951 SMART B3_2 172 263 IPR003340 GO:0003677(InterPro)
Cco02g0638 951 MobiDBLite consensus disorder prediction 269 372 - -
Cco02g0638 951 MobiDBLite consensus disorder prediction 300 323 - -
Cco02g0638 951 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 587 735 - -
Cco02g0638 951 ProSiteProfiles B3 DNA-binding domain profile. 172 263 IPR003340 GO:0003677(InterPro)
Cco02g0638 951 Pfam PPR repeat family 678 725 IPR002885 -
Cco02g0638 951 SUPERFAMILY DNA-binding pseudobarrel domain 165 262 IPR015300 -
Cco02g0638 951 Gene3D - 147 264 IPR015300 -
Cco02g0638 951 MobiDBLite consensus disorder prediction 78 126 - -
Cco02g0638 951 PANTHER OS07G0578800 PROTEIN-RELATED 590 817 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Cco02g0638 951 MobiDBLite consensus disorder prediction 415 455 - -
Cco02g0638 951 MobiDBLite consensus disorder prediction 467 559 - -
Cco02g0638 951 Pfam B3 DNA binding domain 172 261 IPR003340 GO:0003677(InterPro)
Cco02g0638 951 NCBIfam pentatricopeptide repeat 681 714 IPR002885 -
Cco02g0638 951 Coils Coil 50 77 - -
Cco02g0638 951 MobiDBLite consensus disorder prediction 330 358 - -
Cco02g0638 951 MobiDBLite consensus disorder prediction 284 299 - -
Cco02g0638 951 CDD B3_DNA 170 261 IPR003340 GO:0003677(InterPro)
Cco02g0638 951 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 678 712 IPR002885 -
Cco02g0638 951 Pfam DYW family of nucleic acid deaminases 866 950 IPR032867 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0638 Cco-Chr2:6340296 Cco04g2286 Cco-Chr4:36352258 2.30E-66 dispersed
Cco08g1757 Cco-Chr8:28760854 Cco02g0638 Cco-Chr2:6340296 2.90E-57 dispersed
Cco03g1088 Cco-Chr3:19236891 Cco02g0638 Cco-Chr2:6340296 2.30E-56 transposed
Cco07g1454 Cco-Chr7:28652218 Cco02g0638 Cco-Chr2:6340296 8.00E-118 transposed
Cco02g0638 Cco-Chr2:6340296 Cco05g1160 Cco-Chr5:10690879 3.80E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58729 PF14432 DYW_deaminase 6.70E-33 CL0109 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0638 - - - 0.0