Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0638 | ATGGCCCCGTTTGAATTCAAATCAAACTACGGAGCTCTCTTTATTGGCGCTCGAAATTCTCTCTCAAGAGCCCATCACTGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACAGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGTCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTGAACAAACTTGCCGATGCTCTGAAATTTTCCAGCCCTAAATCCTCTCCGACCAAACAGCTAAAGCGTCCTCGTCAGCCACTCGATAAGTCGTCTTTCAGTGTGAGAAGGTCTAGCCGTTTTGCCGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCGTTGAACCACTTCCAGGTATAAGAAGGACTTATCAAAGGAGAGATTTGCTGAATCGGATTTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAATCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGGGGATTTTGGCTGGGTCTACCAGTTCAATTTTGCAAGACACACCTTCCCCTTGAGGATGAAATGCTAACTCTGGTTGACGAGGATGATAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCATCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGAGCATACAATTTAGAAGATAGAGAAGATACCAATGAGGATTCTGATGTCACCCAATTGGAAAAAAGTGGCAAAAGAAATACCAAATCATCAGGGCAATCCAAGGCAAATAATTCTGAGGATAAAGGAGATAACGGTGAGGATTCAGCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAAATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGCGGATTTGGATGTCCCCGAGCTGGAAAAAAGTGGCAAAAGAATTACTAGATCATCAAGTAAAGGGAAAAAGTTAGCCAAACAAAAAGGGTTTAGGCATTTTCCGATCAGAAATGGCGTCTGTCATGGCGGTCCGGCGTGCTCGAACCCCCATTCTTATCTCCTCCTTCTTCAAGATACCTTAATCAAAGCCCTAAGCACCTCGGCAATCCGTAACGATTTCTCAAATTTTCCTCCTCCGTCGCAACAACCTTCTTCGGCTGACCCTCGACATCGTCAAGCCCAGTGGGGCTCGCCGAGCCAGGTTCATCCTCCGAGTGGAAATTTTAATAACCAGTCGTTCTCGGAGTTTCAGAATCGCGATTATGTTCAACAGGGAAGCCCTAGTAATCAATTGAAGTATCAGAGTCAGAATCAGAGCCCTCAACCCAATCCTGGATTTTCCCGGCAGGGTCAGAGCTATACTCAACCCGGTAACCCTAATTCGTGGAATCCTCCAAATCAAAGCTACCCGCAGTATCAAAATCCTTCGCAGGCGAACCCTCAAAATTTCAATTATCAGCAACAAAGAGGCCCTAACCAATGGAACAATCAAAAACAGGGATATCCACAATTTGGAAGGCCTGAACAGCGTAACCCACAAGTACAGGATTCTAATCAGTTGAATAATCAGGCTGGGATTCAAAGGCAAGGTGCTCAAAGTCAAGCACCAAATGCCCTTGTATCTCCTATTGATGAACTGCGGCGCCTTTGTGGAGAGGGGAAGATGAAAGAAGCTGTTGAATTATTGAAAGAAGGTGTTAAAGCTGATGCTGATTGTTTCCATTTGTTGTTTGAACTATGTGGGAAATCCAAGTCATTTGACAATGCCAAAGTAGTTCATGATTACTTTTTACAGTCAACTTGTAGAAGTGATCTGCAATTGAATAATAAAGTGCTTGAGATGTATGGGAGATGTGGAAGCATGAGCGATGCACGGAGAGTGTTCGACTATATGCCTGATAGAAATATTGATTCTTGGCATTTTATGATGAAAGGATATGCTGATAATGGATTGGGTGATGAGGGTCTGGAGTTATTTGAGAATATGAAGCAGCTAGGGTTGCAACCCGATTCACAAACTTTCCTATTTGTTATGTCAGCTTGTGCTAGTGCGAATGCTGTGGAAGAAGGATTTCTGTACTTTGAGTCAATGAAAAATGATTATCATATTACCCCAGACATGGATCATTATTTGGGGCTTTTAGGTATTCTTGGAGAACCAGGACACATTAATGAGGCTTTCGAGTATGTTAAGAAACTGCCAATGGAGCCCACAGTTGAGGTATGGGAGACTTTAAAGAACTATGCTAGAATTCATGGAGATGTTGATCTTGAGGACTATGCAGAGGAGCTAATTGTTGATCTGGACCCGACAAAAGCTGTCTCTAATAAGATATCAACGCCACCTCCCAAAAAACGGTCTGCAATTAGCATGCTTGATGGGAAGAACAGGATTAGTGAATTCAGAAATCCAACTCTCTACAAAGATGATGAAAAATTAAAGGCTTTGAAGGCAATGAAAGAACAAGGGTATGTGCCAGATACTAGATATGTTCTTCATGATATCGATCAAGAGGCCAAAGAGCAGGCATTGCTGTATCATAGTGAACGATTGGCAATCGCATATGGATTGATCAGTACTCCAGCACGAACGCCTCTTAGGATCATTAAGAACCTAAGGATCTGCGGTGATTGTCATAATGCCATCAAAATCATGTCTAGAATTGTTGGGAGAGAGTTAATTGTAAGGGACAACAAACGGTTCCATCATTTTAAGGATGCAGCTTGA | 2856 | 42.93 | MAPFEFKSNYGALFIGARNSLSRAHHWKIEGNELQFSDGILQQKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKFSSPKSSPTKQLKRPRQPLDKSSFSVRRSSRFADKPPPNYKEVPVEPLPGIRRTYQRRDLLNRIYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPLEDEMLTLVDEDDNEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTKPTEFKVYIIRAYNLEDREDTNEDSDVTQLEKSGKRNTKSSGQSKANNSEDKGDNGEDSADVSQLEKSGKKTTKSSGRKSRANKSKDKADNGADLDVPELEKSGKRITRSSSKGKKLAKQKGFRHFPIRNGVCHGGPACSNPHSYLLLLQDTLIKALSTSAIRNDFSNFPPPSQQPSSADPRHRQAQWGSPSQVHPPSGNFNNQSFSEFQNRDYVQQGSPSNQLKYQSQNQSPQPNPGFSRQGQSYTQPGNPNSWNPPNQSYPQYQNPSQANPQNFNYQQQRGPNQWNNQKQGYPQFGRPEQRNPQVQDSNQLNNQAGIQRQGAQSQAPNALVSPIDELRRLCGEGKMKEAVELLKEGVKADADCFHLLFELCGKSKSFDNAKVVHDYFLQSTCRSDLQLNNKVLEMYGRCGSMSDARRVFDYMPDRNIDSWHFMMKGYADNGLGDEGLELFENMKQLGLQPDSQTFLFVMSACASANAVEEGFLYFESMKNDYHITPDMDHYLGLLGILGEPGHINEAFEYVKKLPMEPTVEVWETLKNYARIHGDVDLEDYAEELIVDLDPTKAVSNKISTPPPKKRSAISMLDGKNRISEFRNPTLYKDDEKLKALKAMKEQGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRICGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDAA | 951 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6340296 | 6347207 | + | CcPI632755_02g006380.1 | Cco02g0638 | 171395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0638 | 951 | Gene3D | Tetratricopeptide repeat domain | 587 | 743 | IPR011990 | GO:0005515(InterPro) | |
Cco02g0638 | 951 | SMART | B3_2 | 172 | 263 | IPR003340 | GO:0003677(InterPro) | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 269 | 372 | - | - | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 300 | 323 | - | - | |
Cco02g0638 | 951 | FunFam | Pentatricopeptide repeat-containing protein, mitochondrial | 587 | 735 | - | - | |
Cco02g0638 | 951 | ProSiteProfiles | B3 DNA-binding domain profile. | 172 | 263 | IPR003340 | GO:0003677(InterPro) | |
Cco02g0638 | 951 | Pfam | PPR repeat family | 678 | 725 | IPR002885 | - | |
Cco02g0638 | 951 | SUPERFAMILY | DNA-binding pseudobarrel domain | 165 | 262 | IPR015300 | - | |
Cco02g0638 | 951 | Gene3D | - | 147 | 264 | IPR015300 | - | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 78 | 126 | - | - | |
Cco02g0638 | 951 | PANTHER | OS07G0578800 PROTEIN-RELATED | 590 | 817 | IPR045215 | GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER) | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 415 | 455 | - | - | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 467 | 559 | - | - | |
Cco02g0638 | 951 | Pfam | B3 DNA binding domain | 172 | 261 | IPR003340 | GO:0003677(InterPro) | |
Cco02g0638 | 951 | NCBIfam | pentatricopeptide repeat | 681 | 714 | IPR002885 | - | |
Cco02g0638 | 951 | Coils | Coil | 50 | 77 | - | - | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 330 | 358 | - | - | |
Cco02g0638 | 951 | MobiDBLite | consensus disorder prediction | 284 | 299 | - | - | |
Cco02g0638 | 951 | CDD | B3_DNA | 170 | 261 | IPR003340 | GO:0003677(InterPro) | |
Cco02g0638 | 951 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 678 | 712 | IPR002885 | - | |
Cco02g0638 | 951 | Pfam | DYW family of nucleic acid deaminases | 866 | 950 | IPR032867 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0638 | Cco-Chr2:6340296 | Cco04g2286 | Cco-Chr4:36352258 | 2.30E-66 | dispersed | |
Cco08g1757 | Cco-Chr8:28760854 | Cco02g0638 | Cco-Chr2:6340296 | 2.90E-57 | dispersed | |
Cco03g1088 | Cco-Chr3:19236891 | Cco02g0638 | Cco-Chr2:6340296 | 2.30E-56 | transposed | |
Cco07g1454 | Cco-Chr7:28652218 | Cco02g0638 | Cco-Chr2:6340296 | 8.00E-118 | transposed | |
Cco02g0638 | Cco-Chr2:6340296 | Cco05g1160 | Cco-Chr5:10690879 | 3.80E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58729 | PF14432 | DYW_deaminase | 6.70E-33 | CL0109 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0638 | - | - | - | 0.0 |