Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0640 ATGAAAAAATCCAAAAAAAACAGTATGACCCTTCTCAATTCCATCTTCTTCTTCCTTTTCTTCCTCCTCCGCTTCTCCACCGCTTCTTCACCCGGTCCTCGAGGGTATCTTCTCAATTGCGGTGCCTCCGAATCGGACGCCAAGGTAACCGTCGGCAGCCTTCAATACATTACCGACGAGGGTTTCACCTCTGTTGGAAACATTACGAAGCTTCACGATCCAAATCTGGTGCCGATTCTCTCCACATTGCGCTATTTTCCCGATAAATCGGCTCGGAAATACTGCTATGCGATTCCGGTGGTTAAGGGAGCTAAATACATTGTGAGGACGACGTATTATTACGGTGGATACGACGGTGGGAAGGAGCCGCCGATTTTCGATCAGATTGTGGAAGGGACGAAATGGAGCATCGTGAACACGACGGAGGATTACGCCAATGGGATGTCGTCGTATTACGAGGTTGTGGTGGTGGCGATGGGGAAAATGATGAGCGTTTGTTTAGCGAGGAACCAACATACGGATTCGAGTTCTAGCCCTTTCATTTCGGCTCTGGAGTTGGAGTTTTTGGAGGACTCTGTTTATAACACTACGGATTTCAAGAACCATGCTCTGAGTCTGGTTGCTAGAAGCAGCTTTGGACATGACGTTGATGTTATTGGCTTTCCAGATGATGTATTCAACCGGCAATGGCACCCGTTTGTTGATGAGAACCCATTGGTAACATCCCATGCCAACGTTACTCCTTCAACCTTTTGGAATCTCCCACCAACAAAGGCTTTTAACACTGCCATGACGACCAGCCGTGGGAAATCGCTCAACGTTAGCTGGCCTCCATTCCCACTTCCAGCAGCCTACTACTACATCTCGCTATACTTTCAGGACAATCGATCTCCAAGTCCATATAGCTGGAGGGTCTTTAGTGTTGCTATAAATGGCAAGAATTTCTTTACAAACCTCAATGTCAGTGCTAATGGCGTATCTGTTTACAGTGCGAAATGGCCTTTATCTGGAAAGACCCACGTAGAACTAACTCCTGCAGATGACATGCCTGTTGGGCCTGTGATTAATGCTGCTGAGATCCTTCAAGTTTTTCGTCTCGGTGGAAGGACATTAACTAGAGATGTGATGGCAATGGAGGACTTGGCACGAAGCTTCAACAACCCGCCCCATGATTGGAATGGTGATCCTTGCTTGCCTAAGGAGAATTCGTGGACCGGAGTTTCTTGTTCCGATGGAAAACTTGCTCGAGTTGTCAGTTTGAACTTAACAAACTTTGGCTTATCTGGCACACTTCCTTCAAGCATAAACAATTTAACTGCCCTCTCTCATCTTTGGCTTGGTAGCAACAAACTCTCAGGCTCTATTCCAGAAATGGGTTCATTGAAGGAGTTACAAACACTGCATCTGGAAAGAAACCAATTTGAAGGGCCAATTCCTCATTCACTCTCGAAGCTTCCGCATATTCGTGAAATATTTCTCCAAAATAATGATCTGAAGTCGAAAGCTCTCGAAGAACTGCAGAAGCGAGGCATACACGTCGAGTTGTAG 1548 46.32 MKKSKKNSMTLLNSIFFFLFFLLRFSTASSPGPRGYLLNCGASESDAKVTVGSLQYITDEGFTSVGNITKLHDPNLVPILSTLRYFPDKSARKYCYAIPVVKGAKYIVRTTYYYGGYDGGKEPPIFDQIVEGTKWSIVNTTEDYANGMSSYYEVVVVAMGKMMSVCLARNQHTDSSSSPFISALELEFLEDSVYNTTDFKNHALSLVARSSFGHDVDVIGFPDDVFNRQWHPFVDENPLVTSHANVTPSTFWNLPPTKAFNTAMTTSRGKSLNVSWPPFPLPAAYYYISLYFQDNRSPSPYSWRVFSVAINGKNFFTNLNVSANGVSVYSAKWPLSGKTHVELTPADDMPVGPVINAAEILQVFRLGGRTLTRDVMAMEDLARSFNNPPHDWNGDPCLPKENSWTGVSCSDGKLARVVSLNLTNFGLSGTLPSSINNLTALSHLWLGSNKLSGSIPEMGSLKELQTLHLERNQFEGPIPHSLSKLPHIREIFLQNNDLKSKALEELQKRGIHVEL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6354961 6358524 - CcPI632755_02g006400.1 Cco02g0640 171397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0640 515 Pfam Malectin-like domain 38 363 IPR024788 -
Cco02g0640 515 PANTHER OS07G0107800 PROTEIN-RELATED 37 484 - -
Cco02g0640 515 Gene3D - 216 363 - -
Cco02g0640 515 Gene3D Ribonuclease Inhibitor 371 509 IPR032675 -
Cco02g0640 515 SUPERFAMILY L domain-like 387 503 - -
Cco02g0640 515 Pfam Leucine Rich Repeat 464 485 IPR001611 GO:0005515(InterPro)
Cco02g0640 515 FunFam Leucine-rich repeat receptor-like kinase 373 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0640 Cco-Chr2:6354961 Cco06g0608 Cco-Chr6:6626869 3.80E-124 dispersed
Cco02g0640 Cco-Chr2:6354961 Cco01g1326 Cco-Chr1:21710545 6.50E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33