Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0641 ATGCTCATGGCCTCCGACCACCCCGCCGCCGCCTTCCGCCGCATCACCGAGGAACAAGAACTCTCCGTCATCGTCGACGCCCTCACCCAAGTCGTCTCCGGTGCCGCCTCTTCCGGCCTCCAATTCCACCACGACCATTTCCACCGCCTCCTCTTCCCTCCCACAGCTCCACCCTTCTCCTCCTCCTCTTCAGATTTAGACACGTGTGACTTCTGTAAAATGAACGCCTGCTTGGGCTGCCAGCTCTTCTCCCCCCCCTCCACCACCACCGCCGCCGCCACCAAGAATTCCGACCGCCGTGTCAAGCGTTTGAAGAAGAATTACAGAGGCGTCCGCCAGCGCCCTTGGGGAAAATGGGCCGCCGAAATCCGCGACCCGAAACGTGCGGCACGTGTCTGGCTTGGCACATTCAATACCGCTGAAGATGCCGCACGTGCTTACGACGAAGCTGCTATTAGATTCCGCGGCCCACGTGCGAAGCTCAATTTCCCCTTCCCTGATAATTCCTTAACCACATTCCATTCTTCTCCGCCGCCGGCTTCCACAACCACCTCCGCTTCCGCTTCCACTTCCACAGTCCCCGCTGCCACGTCCATGAAAATGGAGACCCAAAACGACATCGTATTGCCGGAGACTTTCAACGACGATGACGACATTCAGAGATTGCTCATGGATTTTGCTGGTCAATCAAGAGGCTGGTAA 702 57.83 MLMASDHPAAAFRRITEEQELSVIVDALTQVVSGAASSGLQFHHDHFHRLLFPPTAPPFSSSSSDLDTCDFCKMNACLGCQLFSPPSTTTAAATKNSDRRVKRLKKNYRGVRQRPWGKWAAEIRDPKRAARVWLGTFNTAEDAARAYDEAAIRFRGPRAKLNFPFPDNSLTTFHSSPPPASTTTSASASTSTVPAATSMKMETQNDIVLPETFNDDDDIQRLLMDFAGQSRGW 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6362607 6363308 - CcPI632755_02g006410.1 Cco02g0641 171398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0641 233 PANTHER DNA-BINDING DOMAIN 73 192 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco02g0641 233 SMART rav1_2 107 170 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 MobiDBLite consensus disorder prediction 170 202 - -
Cco02g0641 233 SUPERFAMILY DNA-binding domain 107 165 IPR016177 GO:0003677(InterPro)
Cco02g0641 233 FunFam Ethylene-responsive transcription factor 2 106 165 - -
Cco02g0641 233 CDD AP2 106 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g0641 233 Pfam AP2 domain 107 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0641 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0641 Cco-Chr2:6362607 Cco06g2043 Cco-Chr6:30343396 4.80E-26 dispersed
Cco02g0641 Cco-Chr2:6362607 Cco04g1438 Cco-Chr4:29794222 3.00E-28 wgd
Cco02g0641 Cco-Chr2:6362607 Cco05g1164 Cco-Chr5:10746004 4.30E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58730 PF00847 AP2 3.30E-15 CL0081 Cco TF