Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0647 | ATGGAAGCTCTCTCTGTTCCTCTTTACATAATAATATTCCTTTTTCTTTTTGCTTTCTTTTCCACTTCATTTCTTAAAAGAACTGGAAAGCCTAAATCCCAAAAAGCTCTTAGACTTCCTCCTGGTTCCATGGGATTGCCTTGGATTGGTGAAACTTTGCAACTTTATTCTCAAGATCCTAATATCTTTTTCTCACAAAAACAGAGAAGATATGGAGAAATTTTTAAGACCAACATTTTGGGATATCCTTGTGTGATGTTGGCAAGCGCCGCCGCAGCACGGTTCGTTCTGGTGACAAACGCCCATTTATTCCGGCCGACTTACCCGAAAAGCAAAGAGACCATGATCGGACCGGCGGCGCTTTTCTTCCACCAAGGAAATTACCATTCTAACCTCAGGAAACTTGTTCAAAATTCTTTATCTCTTGAACGACTCAGAATTCTTATTCCTCATATTGAAGCCGCCGCCATTTCCGCCACCGATTCCTGGGCCGCCGCCGGCCACGTCATCAACACCTTCCTCGAAATGAAAAAGTTTTCTTTTGAGGTGGGAATTGTAGCAGTGTTTGGTAAGCTAGAAAATGAGTACAAAGAGAAGCTAAAAGAAAAGTATTGCATATTAGACAAAGGCTACAATTGTTTTCCAACCAAATTACCAGGAACAGCATATTCAAAAGCATTATCAGCAAGGAAGAAGCTGAGAGAGATTCTGGGAGAGATAATTATGGAGAGAAGAGAAAAAAGAGTAACAGAGAAAGATTTAGTGGGTCATCTTTTAAACTTCAGAGATGAAAATGGAGAATGTTTAAGTGAAGATCAAATCGCCGACAACATCATCGGAGTGCTCTTCGCCGCCCAAGACACCACCGCCACTGTCCTCACTTGGATTCTTAAATATCTTCATGACAACTTGAAGCTCTTTGAGGCCGTCAAGGCAGAGCAGATGGAAATTTATAGAAGAAATGGAGAGGGGAAGATGCCTCTGTCTTGGGCTCAAATTAAAGACATGCCCTTTGCTCATAGGGTGGTATTAGAGAGCTTGAGAATGGCTAGCATCATATCTTTCACTTTTAGGGAGGCAGTTGTTGATGTGGAATATAAAGGGTATCTTATCCCAAAGGGTTGGAAGGTGATGCCCTTATTTAGGAATATTCATCACAACCATGAGTACTTCCCTGATCCTCATATCTTTGATCCCTCTAGATTTGAGGTGGCTCCAAGACCCAATACATTCATGCCATTTGGCAATGGAGTACATTCTTGCCCTGGCAATGAACTTGCCAAGCTGGAAATCCTCATCTTGCTTCATCACCTCATTACCAAATTTAGGTGGGAAGTTGTGGGATCACAAAGTGGCGTTGAATATGGGCCATTCCCAATGCCTGTCCACGGGCTACCGGCCAGATTTTTCAAACAAACAACAACCAACCAATAG | 1434 | 42.33 | MEALSVPLYIIIFLFLFAFFSTSFLKRTGKPKSQKALRLPPGSMGLPWIGETLQLYSQDPNIFFSQKQRRYGEIFKTNILGYPCVMLASAAAARFVLVTNAHLFRPTYPKSKETMIGPAALFFHQGNYHSNLRKLVQNSLSLERLRILIPHIEAAAISATDSWAAAGHVINTFLEMKKFSFEVGIVAVFGKLENEYKEKLKEKYCILDKGYNCFPTKLPGTAYSKALSARKKLREILGEIIMERREKRVTEKDLVGHLLNFRDENGECLSEDQIADNIIGVLFAAQDTTATVLTWILKYLHDNLKLFEAVKAEQMEIYRRNGEGKMPLSWAQIKDMPFAHRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNHEYFPDPHIFDPSRFEVAPRPNTFMPFGNGVHSCPGNELAKLEILILLHHLITKFRWEVVGSQSGVEYGPFPMPVHGLPARFFKQTTTNQ | 477 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6402125 | 6406315 | - | CcPI632755_02g006470.1 | Cco02g0647 | 171404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0647 | 477 | PRINTS | P450 superfamily signature | 421 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | P450 superfamily signature | 284 | 301 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | P450 superfamily signature | 412 | 421 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | P450 superfamily signature | 341 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | FunFam | Abscisic acid 8 | 29 | 471 | - | - | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 273 | 290 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 421 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 380 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 340 | 358 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 411 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PRINTS | E-class P450 group I signature | 68 | 87 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | PANTHER | CYTOCHROME P450 26 | 38 | 450 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cco02g0647 | 477 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 414 | 423 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0647 | 477 | SUPERFAMILY | Cytochrome P450 | 34 | 470 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | Pfam | Cytochrome P450 | 40 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | Gene3D | Cytochrome P450 | 28 | 471 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0647 | 477 | CDD | CYP90-like | 68 | 468 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0647 | Cco-Chr2:6402125 | Cco08g1779 | Cco-Chr8:28899018 | 3.60E-177 | dispersed | |
| Cco02g0647 | Cco-Chr2:6402125 | Cco05g2251 | Cco-Chr5:31238407 | 4.40E-183 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0647 | K09843 | - | csv:101219389 | 871.307 |