Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0648 | ATGGCTTCCACGACAAACGGACAAGAAGACCAGAACCAAGCCGGAAGGCACCAAGAAGTCGGCCACAAGAGCCTGTTGCAAAGCGATGCTCTGTATCAGTACATTCTGGAGACGAGCGTTTATCCAAGGGAGCCTGAATCGATGAAGGAATTAAGAGAATTGACAGCGAAACATCCATGGAATATAATGACGACATCGGCGGATGAAGGACAGTTCTTAAACATGTTATTGAAGCTAATTAATGCGAAGAAAACGATGGAGATTGGAGTTTATACTGGCTACTCGCTTCTGGCTACAGCCCTAGCTCTTCCCGAAGATGGAACGATTCTGGCTATGGATATTAACAGAGAAAATTACGAGCTGGGTTTGCCGGTGATTGAGAAAGCCGGCGTTGCTCACAAGATCGAGTTCAAGGAAGGCCCTGCTCTCCCTGTTCTTGACGAGATGGTGGCTGATGAGAAGAATCATGGAAGCTTTGACTTCATATTTGTGGATGCTGATAAAGACAACTACATAAATTACCATAAAAGATTGATTGATTTGGTCAAAGTTGGGGGAGTGATCGGGTACGACAACACTCTATGGAACGGGTCCGTGGTTGCCCCACCTAACGCACCCATGCGCAAGTATGTTAGGTATTATCGGGACTTTGTGTTGGAGCTCAACAAAGCTCTTGCAATTGACCCTAGGATCGAGATTTGTATGCTTCCCGTTGGTGATGGAATCACTCTCTGTCGTCGGATCAACTAA | 750 | 46.13 | MASTTNGQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKKTMEIGVYTGYSLLATALALPEDGTILAMDINRENYELGLPVIEKAGVAHKIEFKEGPALPVLDEMVADEKNHGSFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPNAPMRKYVRYYRDFVLELNKALAIDPRIEICMLPVGDGITLCRRIN | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6446750 | 6448576 | - | CcPI632755_02g006480.1 | Cco02g0648 | 171405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0648 | 249 | CDD | AdoMet_MTases | 87 | 188 | - | - | |
| Cco02g0648 | 249 | Pfam | O-methyltransferase | 37 | 248 | IPR002935 | GO:0008171(InterPro) | |
| Cco02g0648 | 249 | Gene3D | Vaccinia Virus protein VP39 | 14 | 249 | IPR029063 | - | |
| Cco02g0648 | 249 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cco02g0648 | 249 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 17 | 249 | - | - | |
| Cco02g0648 | 249 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 28 | 247 | IPR029063 | - | |
| Cco02g0648 | 249 | PANTHER | O-METHYLTRANSFERASE-RELATED | 21 | 248 | IPR050362 | GO:0008757(PANTHER) | |
| Cco02g0648 | 249 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 24 | 248 | IPR002935 | GO:0008171(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0648 | Cco-Chr2:6446750 | Cco11g1421 | Cco-Chr11:26973735 | 4.70E-64 | dispersed | |
| Cco05g1178 | Cco-Chr5:10930552 | Cco02g0648 | Cco-Chr2:6446750 | 3.30E-31 | transposed | |
| Cco02g0648 | Cco-Chr2:6446750 | Cco04g1450 | Cco-Chr4:29922485 | 8.50E-29 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0648 | K00588 | - | csv:101205648 | 495.352 |