Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0650 ATGGGTATCTTTTCAAAGCAAAAAATCTGGAGAGCAGGAACGACCCATGATGATTCGATAGGTTTTAATGGGGTTTCTACGGCGAGCAAGAGGAAATGGACCCGTTTTTTGCCTCTGTTTGTAGCCATGGTGGTCATAGCAGAGATTGCTTCTCTGAGTCGGCTCGACATGGCGAAAAATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCTCCGCTTTTGCAAGAAGGCAATGAAATGTCTATTGATGATGGAGGAATTGATAGAGTTAGCTGTGAGGAGTGGCTGGAGAAGGAAGATGCTGTGGAGTATTCTAGGGACTTCAAAAGGAAACCTGTTTTGGTTTCTGGTTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTTAATCGTGGCCAGCAGCCTGATGCTATATTCGGATCACCTCATCAAGGTAGTGCTGCTAGTGTACTTCGATCCATGGAATCATCGCATTACTATCCAGAAAACAATATTGCTTTGGCGAGACGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTTCCTGTTGGATATTTTTCATGGGCAGAATACGAGATAATGGCACCAGTGCAACCAAAAACGGAGCCTGCCCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCCCGCAACTTCCGTTTGCAAGCTCTTGATGCGCTTGAGAAATTGAATGTCAAAATTGATTCATATGGTAGTTGCCACAGGAACCGCGATGGAAGAGTTGATAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACGGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGCGCTCCAAACATTGAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCACATCAAGGAATTTTCGGATGTTGAGTCAATTGCCAAGTCCATGAAATACCTTGCTGAAAATCCCCAAATGTACAATCAATCGCTAAGATGGAAGTATGACGGTCCATCTGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCAGTACACTCATCATGCCGCCTTTGCATCCATATGGCAACCATCATCCACGAGAAAGAAGAAAACAGTCCCCGGTTCAAGAAACGGCCGTGCAAGTGTTCTCGAGGCTCTGATACCATGTATCATTTATACGTAAGGGAGAGAGGGAGGTTTGAAATGCAATCCATTTTCTTGAGGTCAGGAAATTTGACGTTGGAGGCTTTAGAATTGAGGGTACTCAAAAAGTTCAATTCTTTGAAACACGTACCAATTTGGAAGCAAGAACGGCCCGAAAGCATAAGAGGAGGAGATGAACTAAAACTATACAGAATATATCCTGTTGGGTTGACTCAGAGGCAGGCTTTATATACCTTCAGATTCAAAGACAATAATCATTTCAGAACTCACATAGAAACACACCCTTGTGCTAAGATGGAAGTCGTATTTGTCTGA 1518 43.81 MGIFSKQKIWRAGTTHDDSIGFNGVSTASKRKWTRFLPLFVAMVVIAEIASLSRLDMAKNAAMVDSWVDLFYGSPLLQEGNEMSIDDGGIDRVSCEEWLEKEDAVEYSRDFKRKPVLVSGSEKEWRTCDVGCQFGFNRGQQPDAIFGSPHQGSAASVLRSMESSHYYPENNIALARRKGYTVVMTTSLSSDVPVGYFSWAEYEIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEEFAPSPDSFLHIKEFSDVESIAKSMKYLAENPQMYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATIIHEKEENSPRFKKRPCKCSRGSDTMYHLYVRERGRFEMQSIFLRSGNLTLEALELRVLKKFNSLKHVPIWKQERPESIRGGDELKLYRIYPVGLTQRQALYTFRFKDNNHFRTHIETHPCAKMEVVFV 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6487056 6492533 - CcPI632755_02g006500.1 Cco02g0650 171407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0650 505 Gene3D - 161 354 IPR038577 -
Cco02g0650 505 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 108 381 - -
Cco02g0650 505 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 63 477 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Cco02g0650 505 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 215 376 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Cco02g0650 505 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 162 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0650 Cco-Chr2:6487056 Cco05g1171 Cco-Chr5:10825099 7.30E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0650 K00753 - csv:101205170 971.459