Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0662 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGCGGCAAATCAGCATGTCACGACCTCCTTGTATGTTGGAGATCTTGACGTCAACGTCACCGATTCTCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGCGTCAAGGGCATTAGATATGCTAAACTTCACCCCTTTGAATGGGACTCCCATTAGAGTCATGTATTCACATCGGGACCCTAGCGTGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCTCTGCATGATACCTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATTCATCTGGCCAGTCCAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTTAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGTCCTCAATGGAAAGAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTGTATGTTAAGAATTTAGATGATAGCATTGACGATGAAAAACTGAAGGAGTTATTCACTGGGTTTGGAACCATTACCTCATGCAAGGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCTCAACTCCGGAAGAGGCCGGCAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAGATATTCTATGGCCAAGCTCCACCTACTATTATTTCCTCCCAGCCCGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCCGGTGGCAGGCGTGCTGGTGCCATTCAGCAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCATTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCGGACCAGCAGAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTTCACTTGCTGGAGTCACCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCGATGGAGGTTTTAAGAAGCGTCGCTCAGCAGACCGGCAATGCAGCTGATCAATTGGCTTCACTATCTCTGACTGACAACCTTGATTCCTAA 1950 46.97 MAQVPPQPQVPNSGADPAANGAANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDMLNFTPLNGTPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEVLNGKKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDSIDDEKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSTPEEAGRALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAFHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6645631 6648989 - CcPI632755_02g006620.1 Cco02g0662 171419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0662 649 PANTHER RNA BINDING PROTEIN 23 209 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cco02g0662 649 Gene3D - 198 291 IPR012677 -
Cco02g0662 649 Gene3D - 292 397 IPR012677 -
Cco02g0662 649 FunFam Polyadenylate-binding protein 294 399 - -
Cco02g0662 649 FunFam Polyadenylate-binding protein 16 114 - -
Cco02g0662 649 Pfam RNA recognition motif 313 381 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 Pfam RNA recognition motif 210 278 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 Pfam RNA recognition motif 31 101 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 Pfam RNA recognition motif 119 186 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 Gene3D - 3 109 IPR012677 -
Cco02g0662 649 Gene3D - 110 197 IPR012677 -
Cco02g0662 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723(InterPro)
Cco02g0662 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676(InterPro)
Cco02g0662 649 CDD RRM3_I_PABPs 207 286 - -
Cco02g0662 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 SMART rrm1_1 312 384 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 SMART rrm1_1 209 281 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 SMART rrm1_1 30 103 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 SMART rrm1_1 118 190 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 CDD RRM1_I_PABPs 30 109 IPR034364 -
Cco02g0662 649 SMART rrm2_1 209 281 IPR003954 GO:0003676(InterPro)
Cco02g0662 649 SMART rrm2_1 118 190 IPR003954 GO:0003676(InterPro)
Cco02g0662 649 SMART rrm2_1 312 384 IPR003954 GO:0003676(InterPro)
Cco02g0662 649 SMART rrm2_1 30 103 IPR003954 GO:0003676(InterPro)
Cco02g0662 649 Gene3D - 547 631 - -
Cco02g0662 649 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g0662 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cco02g0662 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 CDD RRM4_I_PABPs 310 388 - -
Cco02g0662 649 FunFam Polyadenylate-binding protein 548 630 - -
Cco02g0662 649 Pfam Poly-adenylate binding protein, unique domain 559 624 IPR002004 GO:0003723(InterPro)
Cco02g0662 649 SUPERFAMILY PABC (PABP) domain 493 638 IPR036053 GO:0003723(InterPro)
Cco02g0662 649 FunFam Polyadenylate-binding protein 115 198 - -
Cco02g0662 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723(InterPro)
Cco02g0662 649 SMART poly_2 564 627 IPR002004 GO:0003723(InterPro)
Cco02g0662 649 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676(InterPro)
Cco02g0662 649 FunFam Polyadenylate-binding protein 199 293 - -
Cco02g0662 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723(InterPro)
Cco02g0662 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0662 Cco-Chr2:6645631 Cco08g0857 Cco-Chr8:20441841 9.80E-186 dispersed
Cco05g0356 Cco-Chr5:2888135 Cco02g0662 Cco-Chr2:6645631 6.80E-16 transposed
Cco05g0856 Cco-Chr5:7242982 Cco02g0662 Cco-Chr2:6645631 6.80E-30 transposed
Cco07g1813 Cco-Chr7:32234207 Cco02g0662 Cco-Chr2:6645631 6.00E-08 transposed
Cco08g0918 Cco-Chr8:21096746 Cco02g0662 Cco-Chr2:6645631 2.80E-06 transposed
Cco10g1767 Cco-Chr10:31254979 Cco02g0662 Cco-Chr2:6645631 2.00E-08 transposed
Cco02g0662 Cco-Chr2:6645631 Cco05g1180 Cco-Chr5:10936911 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0662 K13126 - csv:101223017 1192.95