Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0683 ATGAAAATGGCCACATCCTCAGCTTTTGCATTTTTATCCATCTTTAATCTCCTCCTCTTCTCTTCCTTTTCCGCTGTCGCTCTCGACATCAACATTGGTATCGGTATCGGCAACGGAAAAACTCCTCCGCCGTCCGAATCCTCTGATTGCAATACTTCCCCTCCACCGCCGCCGCCACCTCCTCCTCCTCCTTCTCCTCCACCGCCGCCGCGGGTAAAAAAGCCATCACCAACTCCCTCCCCAAAGCCTCCTCGAAAACAGCCGCCGGGGCCGGCGCTGCAATTCGAGAGCGAGAGAATCAAAATTGCATTTGGTGTGATTAAAAAGTACAAAAGTAGAATCGAGAATGACCCATTGAATGTTATAAAAACATGGAATGGGCCAAACGTGTGCAAATACAGAGGATTCAGTTGCGACACAGTTCCCGGCTTCGGAAAACAGAGAGGAGTTTCGGGGCTTAGCTTCAACAATTTCAATTTCAGCGGTTCGAAGTTGACCCTGGATGGGCTTGTAGACCAGTTGCAGGATCTCACATTCTTCCATGCCAATTCAAACTTCTTCTTCTCCACTATCCCAAAGCTCATCTCCAAGATCAAATTCTTTTACGAGCTGGATCTTAGCAATAACAACTTCAGGGGATCGTTCCCTGATGAAGTCCTCGGCGCCGTTAATCTGACGTTCTTGGACCTCAGGTTCAATAACTATTACGGTCCGGTTCGGTCCGAGCTGTTTGATATGGACATCAGCACAGCTATCTTCCTCAACAACAATAAGTTTAATCACAACATTCCGGCCAACCTCGGCAGCACCCCTGCTCGGTACCTCACATTCACGAGCAACGAGTTCACCGGCGAGATCCCAAAAAGCATCGGAATCGGAAAAACAAAGAAGAGTCTAATCGAAGTCCTCTTCTCCGACAACAAGCTTTCCGGTTGTTTACCAATGGAGATGGGTCTTCTAGAGAACACCGTTCTGTTGGACGCAAGCAAAAACTCCCTCACCGGCCCAATCCCATCCTCCTTCAGCTGCTTAACCAAAATGCAGATTCTCAATTTCTCCGACAACACCTTATACGGCGCCGTTTCAGAGGACGTCTGCAAGTTACGAAATCTCCAACAATTCACACTCCGCAACAACTTCTTCACCCAAGTCGGCCCCGTCTGCCGGAGCTTGATCTCCAAGAAAGTTCTAGACGTTTCTGGAAACTGCATTTTGGGTCTGCCGAAACAGAGACCGGAGAAGGAATGTACGAATTTCTTCAGTAAAGGTCATTCTTGCCCTGATGAGAAGTCTATGAAGATTATTCCTTGTAAGCCGCCGAATTTCGGCCGCCATCCACCGCCGCCCAGGAAGCTGACGGAGATGAGAACTTATGCTGCTCTTGTTCCTAATTGA 1395 48.6 MKMATSSAFAFLSIFNLLLFSSFSAVALDINIGIGIGNGKTPPPSESSDCNTSPPPPPPPPPPPSPPPPPRVKKPSPTPSPKPPRKQPPGPALQFESERIKIAFGVIKKYKSRIENDPLNVIKTWNGPNVCKYRGFSCDTVPGFGKQRGVSGLSFNNFNFSGSKLTLDGLVDQLQDLTFFHANSNFFFSTIPKLISKIKFFYELDLSNNNFRGSFPDEVLGAVNLTFLDLRFNNYYGPVRSELFDMDISTAIFLNNNKFNHNIPANLGSTPARYLTFTSNEFTGEIPKSIGIGKTKKSLIEVLFSDNKLSGCLPMEMGLLENTVLLDASKNSLTGPIPSSFSCLTKMQILNFSDNTLYGAVSEDVCKLRNLQQFTLRNNFFTQVGPVCRSLISKKVLDVSGNCILGLPKQRPEKECTNFFSKGHSCPDEKSMKIIPCKPPNFGRHPPPPRKLTEMRTYAALVPN 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6837501 6841748 - CcPI632755_02g006830.1 Cco02g0683 171440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0683 464 Pfam Leucine Rich Repeat 325 344 IPR001611 GO:0005515(InterPro)
Cco02g0683 464 Pfam Leucine Rich Repeat 203 218 IPR001611 GO:0005515(InterPro)
Cco02g0683 464 Gene3D Ribonuclease Inhibitor 294 428 IPR032675 -
Cco02g0683 464 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 92 447 IPR051582 -
Cco02g0683 464 Gene3D Ribonuclease Inhibitor 105 293 IPR032675 -
Cco02g0683 464 FunFam Leucine-rich repeat receptor protein kinase EMS1 292 387 - -
Cco02g0683 464 MobiDBLite consensus disorder prediction 48 90 - -
Cco02g0683 464 MobiDBLite consensus disorder prediction 39 94 - -
Cco02g0683 464 SUPERFAMILY L domain-like 116 406 - -
Cco02g0683 464 SUPERFAMILY Formin homology 2 domain (FH2 domain) 54 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0683 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0683 Cco-Chr2:6837501 Cco08g1800 Cco-Chr8:29105401 1.00E-59 dispersed
Cco02g0680 Cco-Chr2:6791200 Cco02g0683 Cco-Chr2:6837501 4.00E-113 proximal
Cco02g0683 Cco-Chr2:6837501 Cco05g1185 Cco-Chr5:10993117 2.00E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90