Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0686 ATGGATCCAAATTCTACTGATTCCTCAACATCACCTATTGTTAATTCCTCGGAAACTAAACCACCGGAAGTACAGCCTCAGGCTCCTGCTATCAATGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGGATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCTAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAATTCGACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCAGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGAATGATGGATTAGCTGTCAAGCCAGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCAAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGTGATGACGAAGACTATGAGATTCCTTTGATTTGTACTCATTGCTCAAATCCTTGTGCTCTTGTTTCTTGCGTCAGTCAATGGCTTGAGTCTAAGCGTGAGCGATTGTCGAAGGAGACGCGGCATCGGCAATATAATTGCGAAAGAGAAGTTTCTGGGGATTCAATTTCTTCGCCCTTTACTCCCAACGATTTCTCAGTTTTTGTTTTGTGGGTTGTGCTCGAAATAATCTATTCTGGTTGGTTCCCTTCAGAAAAGGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCTTATGTGTGCCTTGAATATGGTAGTACAAAGTTTCGCACCACCACTTGCACAGATGGTGGAAGAAATCCCACATTCCAAGAGAAATTTGTGTTTTCTCTTATTGAAGGGCTAAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTAGCAGAAGGGTATGATGACAGTTCATGGTCACTTCAAACTAAAACTGGCAGTTTCTCAATAAGAAAAGGCATATGTTCTGATAGCAATGCTTTGCAAACATTTCTGTGGGCATTGTGTACCAAGGATCTCCGATGCTTTAAGAGACCGTCGTCAAGTTTTGCGCCCTCAGCACCACCATTTCATGCACCTACTCCACCCCAAGTCCCCGCATATGCTACAATGCCACCGGCACACCCGACAGCCTACCCTCCTCCTAGTGCTACACCCTATGCATCATTTCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAGCATATCAAACATCCATGTACTCCCCATGTCCATCTGGGTATCCTCCCACATCGTACCCGCCGCCTCCCTCGGGTTATCCTCCCAGTCCCTACCCACCACCTCCACAAGCCTCACCCTTCTATCCTCCAGGTCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 2808 43.55 MDPNSTDSSTSPIVNSSETKPPEVQPQAPAINGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIRLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGNDGLAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDQKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYEIPLICTHCSNPCALVSCVSQWLESKRERLSKETRHRQYNCEREVSGDSISSPFTPNDFSVFVLWVVLEIIYSGWFPSEKVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGSFSIRKGICSDSNALQTFLWALCTKDLRCFKRPSSSFAPSAPPFHAPTPPQVPAYATMPPAHPTAYPPPSATPYASFQSPYPSYPPSSGAYQTSMYSPCPSGYPPTSYPPPPSGYPPSPYPPPPQASPFYPPGPYPGVYPPPQY 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6863544 6875004 + CcPI632755_02g006860.1 Cco02g0686 171443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0686 935 MobiDBLite consensus disorder prediction 491 513 - -
Cco02g0686 935 CDD PTP_PTEN 155 320 IPR045101 GO:0016791(InterPro)
Cco02g0686 935 MobiDBLite consensus disorder prediction 529 554 - -
Cco02g0686 935 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 690 789 IPR035892 -
Cco02g0686 935 Pfam C2 domain 690 782 IPR000008 -
Cco02g0686 935 Gene3D Protein tyrosine phosphatase superfamily 130 327 IPR029021 -
Cco02g0686 935 SMART PTEN_C2_2 329 457 IPR014020 -
Cco02g0686 935 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 132 550 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cco02g0686 935 MobiDBLite consensus disorder prediction 1 74 - -
Cco02g0686 935 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311(InterPro)
Cco02g0686 935 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 259 298 IPR000387 GO:0016311(InterPro)
Cco02g0686 935 ProSiteProfiles C2 domain profile. 666 785 IPR000008 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 831 852 - -
Cco02g0686 935 Pfam PTEN2, C2 domain 332 458 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 901 935 - -
Cco02g0686 935 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 454 587 - -
Cco02g0686 935 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 130 327 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 92 112 - -
Cco02g0686 935 ProSiteProfiles C2 tensin-type domain profile. 331 458 IPR014020 -
Cco02g0686 935 SMART C2_3c 686 783 IPR000008 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 827 852 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 39 74 - -
Cco02g0686 935 CDD C2 690 784 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 1 23 - -
Cco02g0686 935 Gene3D C2 domain 689 797 IPR035892 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 457 490 - -
Cco02g0686 935 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 158 326 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0686 Cco-Chr2:6863544 Cco04g1461 Cco-Chr4:30047214 2.80E-202 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0686 K01110 - csv:101222304 1131.32