Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0686 ATGGATCCAAATTCTACTGATTCCTCAACATCACCTATTGTTAATTCCTCGGAAACTAAACCACCGGAAGTACAGCCTCAGGCTCCTGCTATCAATGGAATGGATAATGTAACCCGTGATGCACCGTCTAAGCTATCTCCTAGTGGGATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGACTGATAATGCTGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCAAAATCTGCTGCTTCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCTAGTTTTGTGGGATCAATTACAAGAGGATTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAATTCGACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGATGTGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTACATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTATGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACCGAAAATCGGAAAATGCTGTACACGAATGATCTTGATGGGTTTGACAAGAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTTGATACGTCGCCCAACATGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCAAGACCTTCAGCAGCTGATGGAAGTGAAGTTTCTGAGAACCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGAATGATGGATTAGCTGTCAAGCCAGCATCTAAATCTCAAACAAGTACGACTTCATCAGATGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTCCTCCCAGTGATCAAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGTGATGACGAAGACTATGAGATTCCTTTGATTTGTACTCATTGCTCAAATCCTTGTGCTCTTGTTTCTTGCGTCAGTCAATGGCTTGAGTCTAAGCGTGAGCGATTGTCGAAGGAGACGCGGCATCGGCAATATAATTGCGAAAGAGAAGTTTCTGGGGATTCAATTTCTTCGCCCTTTACTCCCAACGATTTCTCAGTTTTTGTTTTGTGGGTTGTGCTCGAAATAATCTATTCTGGTTGGTTCCCTTCAGAAAAGGTTATTGGATGCACAAAGTTGAAAGATACGGAATGGATTTCAAGGCAGGATCCTTATGTGTGCCTTGAATATGGTAGTACAAAGTTTCGCACCACCACTTGCACAGATGGTGGAAGAAATCCCACATTCCAAGAGAAATTTGTGTTTTCTCTTATTGAAGGGCTAAGAGAGATTAATGTCACAGTTTGGAACAGCAATACAGTTACTTATGATGACTTCATTGGCAATGGAAAAATCCAATTGGCAAAAGTTCTAGCAGAAGGGTATGATGACAGTTCATGGTCACTTCAAACTAAAACTGGCAGTTTCTCAATAAGAAAAGGCATATGTTCTGATAGCAATGCTTTGCAAACATTTCTGTGGGCATTGTGTACCAAGGATCTCCGATGCTTTAAGAGACCGTCGTCAAGTTTTGCGCCCTCAGCACCACCATTTCATGCACCTACTCCACCCCAAGTCCCCGCATATGCTACAATGCCACCGGCACACCCGACAGCCTACCCTCCTCCTAGTGCTACACCCTATGCATCATTTCAATCTCCCTATCCTTCTTACCCACCCAGCTCTGGAGCATATCAAACATCCATGTACTCCCCATGTCCATCTGGGTATCCTCCCACATCGTACCCGCCGCCTCCCTCGGGTTATCCTCCCAGTCCCTACCCACCACCTCCACAAGCCTCACCCTTCTATCCTCCAGGTCCTTATCCTGGAGTTTATCCCCCACCACAGTATTGA 2808 43.55 MDPNSTDSSTSPIVNSSETKPPEVQPQAPAINGMDNVTRDAPSKLSPSGITSWAKNLKISQPQSASQDGTTDNAAGKSAFARFTSGLGLNLSPKSAASNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIRLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSRPSAADGSEVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGNDGLAVKPASKSQTSTTSSDDVASLTHATKQVSLGDGGAKQTAPPSDQKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYEIPLICTHCSNPCALVSCVSQWLESKRERLSKETRHRQYNCEREVSGDSISSPFTPNDFSVFVLWVVLEIIYSGWFPSEKVIGCTKLKDTEWISRQDPYVCLEYGSTKFRTTTCTDGGRNPTFQEKFVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGSFSIRKGICSDSNALQTFLWALCTKDLRCFKRPSSSFAPSAPPFHAPTPPQVPAYATMPPAHPTAYPPPSATPYASFQSPYPSYPPSSGAYQTSMYSPCPSGYPPTSYPPPPSGYPPSPYPPPPQASPFYPPGPYPGVYPPPQY 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6863544 6875004 + CcPI632755_02g006860.1 Cco02g0686 171443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0686 935 MobiDBLite consensus disorder prediction 491 513 - -
Cco02g0686 935 CDD PTP_PTEN 155 320 IPR045101 GO:0016791(InterPro)
Cco02g0686 935 MobiDBLite consensus disorder prediction 529 554 - -
Cco02g0686 935 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 690 789 IPR035892 -
Cco02g0686 935 Pfam C2 domain 690 782 IPR000008 -
Cco02g0686 935 Gene3D Protein tyrosine phosphatase superfamily 130 327 IPR029021 -
Cco02g0686 935 SMART PTEN_C2_2 329 457 IPR014020 -
Cco02g0686 935 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 132 550 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cco02g0686 935 MobiDBLite consensus disorder prediction 1 74 - -
Cco02g0686 935 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311(InterPro)
Cco02g0686 935 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 259 298 IPR000387 GO:0016311(InterPro)
Cco02g0686 935 ProSiteProfiles C2 domain profile. 666 785 IPR000008 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 831 852 - -
Cco02g0686 935 Pfam PTEN2, C2 domain 332 458 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 901 935 - -
Cco02g0686 935 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 454 587 - -
Cco02g0686 935 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 130 327 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 92 112 - -
Cco02g0686 935 ProSiteProfiles C2 tensin-type domain profile. 331 458 IPR014020 -
Cco02g0686 935 SMART C2_3c 686 783 IPR000008 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 827 852 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 39 74 - -
Cco02g0686 935 CDD C2 690 784 - -
Cco02g0686 935 MobiDBLite consensus disorder prediction 1 23 - -
Cco02g0686 935 Gene3D C2 domain 689 797 IPR035892 -
Cco02g0686 935 MobiDBLite consensus disorder prediction 457 490 - -
Cco02g0686 935 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 158 326 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0686 K01110 - - csv:101222304 1131.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0686 Cco-Chr2:6863544 Cco04g1461 Cco-Chr4:30047214 2.80E-202 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g608 . . . . . Bpe12g00295 . . Cmo19g00604 Cmo11g01385 . . . . . Cpe04g00297 Cpe15g00474 . . . . . . . Cla02g00626 Cam02g0659 Cec02g0663 Cco02g0686 Clacu02g0667 . Cre02g0980 . . Cone3ag0993 Cone10ag1014 Lsi03g00523 Csa07g00733 . Cme01g00075 . . . . . . . . . . . Cma11g01729 Cma19g00586 Car11g01111 . . . . . . . . . . . . . . . . . . . Chy01g00081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83