Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0687 ATGGCTTTGCACTCAAATAAACTCAGAACCCAACGCCTCCATAACTCTCTCTTCTTCTTCGACTTCTTTCACTGCACTGAACAACAACACCTTCAAACAGAGCATCCCATTTTCCTCAACAATGGCGGCACCAACGACTTCCCCTTTTTCCAAGAAACAACCCATTTCCATATTTACGAAGACGAGGAGCTCAATCATTTGTTGTCCAAAGAAAAAGACCAGAATCTCCAAGCCGGCGCCGCTTTGAAAACCTTGGTTCAAACAGATAATGCTTTGTCTCTCGCTAGAACAGAGGCCATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCTCTCTCACAGCTCTCTTAGCAATTAATTACCTCGATAGAATCCTCTCTGGCCCCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAGTCGAAGAAATTCGTGTCCCTCTTCTTCTAGATCTCCAGGTGGAAGATTCAAAGTACATTTTTGAAGCGAAAACGATACAGAGAATGGAGCTTTTGGTGCTTACTGCTCTGCAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGCATTATCACAAAAGGGCTTGGAATGAAGAATCAGTACATTCAAAGAGAGTTTCTTAGACGTTGTGAGCGTCTTCTCCTCTCTCTCGTCTCTGATTCGAGGTCGGTGGGGATTCTTCCTTCTGTAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGAAGCTGTAATCCATTGGAGGAGTTTCAGGATCAGCTTCTTAATGCCCTCAAAATAAATAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAGCCAAAGGATCAGGGAAAAGGAAGCATGTGGAGGAGGAAGCAGAATCAGAAGCAGAAGCAGAATCATCAGAAGCAGAAACAGAGGAAGAAGCAGAAGCAGGGAGTCCAAATGGAGTAATGGAGGCTAATTTCAGCTGTGAAAGCTCCAATGATTCGTGGGAAATGGGGTCGATTGTGTCAGAGTACACACATTTTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAAAGAATCAGACCCACTCGATGA 1128 43.97 MALHSNKLRTQRLHNSLFFFDFFHCTEQQHLQTEHPIFLNNGGTNDFPFFQETTHFHIYEDEELNHLLSKEKDQNLQAGAALKTLVQTDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPHFQRDKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKYIFEAKTIQRMELLVLTALQWKMHPVTPVSFLGIITKGLGMKNQYIQREFLRRCERLLLSLVSDSRSVGILPSVMAVSAMVSVVEEMGSCNPLEEFQDQLLNALKINKGRVKECCKVIMEAKAKGSGKRKHVEEEAESEAEAESSEAETEEEAEAGSPNGVMEANFSCESSNDSWEMGSIVSEYTHFSSSSSSSSSKRIRPTR 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6898797 6901179 + CcPI632755_02g006870.1 Cco02g0687 171444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0687 375 CDD CYCLIN_AtCycD-like_rpt2 198 290 - -
Cco02g0687 375 Coils Coil 300 325 - -
Cco02g0687 375 PANTHER CYCLINS 59 260 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco02g0687 375 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Cco02g0687 375 Pfam Cyclin, N-terminal domain 86 195 IPR006671 -
Cco02g0687 375 SMART cyclin_7 101 189 IPR013763 -
Cco02g0687 375 SMART Cyclin_C_2 198 318 IPR004367 -
Cco02g0687 375 MobiDBLite consensus disorder prediction 356 375 - -
Cco02g0687 375 MobiDBLite consensus disorder prediction 298 345 - -
Cco02g0687 375 MobiDBLite consensus disorder prediction 310 325 - -
Cco02g0687 375 Pfam Cyclin, C-terminal domain 198 314 IPR004367 -
Cco02g0687 375 ProSitePatterns Cyclins signature. 96 127 IPR048258 -
Cco02g0687 375 SUPERFAMILY Cyclin-like 53 196 IPR036915 -
Cco02g0687 375 Gene3D - 77 196 - -
Cco02g0687 375 Gene3D - 65 288 - -
Cco02g0687 375 FunFam D6-type cyclin 79 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0687 Cco-Chr2:6898797 Cco08g1802 Cco-Chr8:29125670 1.40E-67 dispersed
Cco02g0687 Cco-Chr2:6898797 Cco05g1187 Cco-Chr5:11027647 1.10E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0687 K14505 - csv:101222066 556.984