Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0692 ATGAACTTCCCTTCTAACTTCCTCTCTCTCCTCCTCTTCCTCCTCCTCTCTCTCTCCTCCTCCCTTCAATCTCTCACCTCTCCCTCCGATCTCTCCGCCCTCAAAGCCTTCAAATCCGCCATCAAACCCTCTTCCATTCCCCCTTGGTCCTGTTTAGCTTCCTGGAATTTCTCCACCGATCCCTGCGCTCTCCCTCGTCGGACCTCCTTCTCCTGCGGCCTCCTCTGTAACTCCGCCGCCACTCGCGTCACCCAACTCACCCTCGATCCCGCTGGCTACTCCGGTACTCTCTCTCCACTCATCTCTCGACTTACTTACTTGACTGTTCTTGACCTCTCTGATAATTCCTTCTCTGGTTTCATCCCCTCTGCCATTTCCTCTCTCCCTAATCTCCAAATCCTCACTCTCCGATCCAATTCATTTTCTGGATCCATTCCCCCTTCTATTTCCAATCTTAAATCACTTGAATCCTTGGATTTCTCCCATAATTCCCTCACTGGTAATCTCCCCAAATCTCTCCATTTTCTCTCTGTTTTAAGACGCCTCGATCTCAGCTTCAATCAACTCACCGGCTCCATTCCTAAACTCCCATCTAACTTGCTTGAACTCGCGTTAAAACGAAATTCCCTTTCTGGGTATTTGGATAAATCCTCCTTCTCCGACTCGAATCAATTGGAAGTAATCGAACTCAGTGAAAATTCCCTCGCCGGAACCTTACCGGCCTGGTTCTTCCTCCTTCCTTCTCTCCAACAGATCAATCTGGCCAATAACAGCCTAACCCGTCTCGAGATCTCCCCCGCCGCCGGTGGTGGCAGCGATCTCGTTGCCGTCGATTTGGGGTTTAACAGAATCGAAGGGAACGTGCCAGTGAATTTCGTTAGCTATCCGGCGTTGTCGTCGTTGTCGCTCCGGTACAATCGGCTACGTGGCGCGATCCCATTGGAATTCAGCGAGAAGAAGACGATGAAGAGATTGTACTTGGACGGGAATTTTTTGACTGGGAAGCCACCGGCGGCGTTCTTCTCCGGCGGGGGAGATCCGGTTTCCGGTAGCTTGGGGGATAATTGTCTGCAGGGATGTCCACAGTCGTCTCAGCTGTGCGCTCCGTCACAGAAGCCGAACGCGGTTTGCAAGGAAGCGTACGGAAACGGGAGGGGAAGAGGAAAACCGATGACCTGA 1179 51.91 MNFPSNFLSLLLFLLLSLSSSLQSLTSPSDLSALKAFKSAIKPSSIPPWSCLASWNFSTDPCALPRRTSFSCGLLCNSAATRVTQLTLDPAGYSGTLSPLISRLTYLTVLDLSDNSFSGFIPSAISSLPNLQILTLRSNSFSGSIPPSISNLKSLESLDFSHNSLTGNLPKSLHFLSVLRRLDLSFNQLTGSIPKLPSNLLELALKRNSLSGYLDKSSFSDSNQLEVIELSENSLAGTLPAWFFLLPSLQQINLANNSLTRLEISPAAGGGSDLVAVDLGFNRIEGNVPVNFVSYPALSSLSLRYNRLRGAIPLEFSEKKTMKRLYLDGNFLTGKPPAAFFSGGGDPVSGSLGDNCLQGCPQSSQLCAPSQKPNAVCKEAYGNGRGRGKPMT 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6975274 6976452 + CcPI632755_02g006920.1 Cco02g0692 171449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0692 392 SUPERFAMILY L domain-like 26 336 - -
Cco02g0692 392 SMART LRR_typ_2 104 127 IPR003591 -
Cco02g0692 392 SMART LRR_typ_2 246 271 IPR003591 -
Cco02g0692 392 SMART LRR_typ_2 152 175 IPR003591 -
Cco02g0692 392 SMART LRR_typ_2 128 151 IPR003591 -
Cco02g0692 392 SMART LRR_typ_2 176 203 IPR003591 -
Cco02g0692 392 Gene3D Ribonuclease Inhibitor 198 359 IPR032675 -
Cco02g0692 392 PRINTS Leucine-rich repeat signature 107 120 - -
Cco02g0692 392 PRINTS Leucine-rich repeat signature 152 165 - -
Cco02g0692 392 Pfam Leucine rich repeat 199 259 IPR001611 GO:0005515(InterPro)
Cco02g0692 392 Pfam Leucine rich repeat 102 140 IPR001611 GO:0005515(InterPro)
Cco02g0692 392 Pfam Leucine rich repeat 149 189 IPR001611 GO:0005515(InterPro)
Cco02g0692 392 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515(InterPro)
Cco02g0692 392 Gene3D Ribonuclease Inhibitor 26 197 IPR032675 -
Cco02g0692 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 10 382 IPR053213 -
Cco02g0692 392 FunFam Nuclear pore complex protein NUP107 27 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0692 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0692 Cco-Chr2:6975274 Cco07g0962 Cco-Chr7:22246993 7.80E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35