Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0695 ATGGCGGCGACAACCAATCCAGATCCGATCCAGACAAATCCAACACTCAATCCACCTCCAAACAAGCGGATCTTCATCCTCTCCGGCCAGAGCAACATGGCGGGACGCGGCGGCGTCTTAAAGAAGCCCCACCGGTGGGACGGCGTGGTCCCACCAGAAGCACAACCGCACCCGTCGATATTCCGGCTGAGCGCGAAGAAGCAATGGGAGGTGGCGCGTGAGCCACTCCACGCGGACATCGACACAGAGAAGACGTGCGGGGTGGGCCCAGGTATGGTGTTTGCGAACGGAGTGAGAGAGCGGGTGGGGACGGTGGCGGTGGTGCCGTGCGCCGTCGGAGGAACGGCGATCAGAGAGTGGGCGCGTGGGGAGAAGCTGTATGAGGAAATGGTGAAGAGGGCGAGATATAGCGTGAAGGACGGCGGAGAAATTAGGGCCATTCTGTGGTTTCAAGGAGAAAGTGACACCTCTACTGAAAATGATGCTGATGCGTATCAGGGGAAGATGGAGGCGTTTGTTGCTAATGTGCGCCGGGATTTGGCTTTGCCTTCTCTCCCAATCATTCAGGTAGCACTGGCATCAGGATCCAAGTACATTGAAAAAGTAAGGGAGGCTCAATTGGGGATGAAAATGGAGAATTTGGTGTGTGTGGATGCGAAGGGATTGGAACTCCAAGAAGACAACCTCCATCTCACAACACATGCTCAGATTAAAAGGAGTACACGTGGCAATCTGGGTTTCCTTAAATGGCAAAATGGGGATGAAAACGGTAATCGTCAACTACTGGTATCCGTGTATTTGGCTTATTGGAGAAGAAGGGATAAGGAGCTTCAAGAAAGAACTCAGGAGTTTTCCGGCGCCAATCGAGCTCCTCAGATGGCCGTTCTTCAAGCTTCCGCCTCTCTCTCTCTCGCCACACGCGATGCTTCCTTCGCAAGAACAGCACCAAAAGTCTTTCCGCTTCATAGAGGTCCCCTACCGAATTCATACCGACTTGGAACGGCGTTCGCTACTGGCTCTCCACTTGTGTTAATAAGCAAGCCATCTGGTCAAAAGAAGCACGCACTCAAACAAAATTCTGTTTCTATAAGATGTGAACAAAGTACCCAACAGAGTAATCTGGATGTTTGGCTTGGGCGCTTTGCGATGGTAGGATTTGCTATTGCAATTAGTGTTGAAATAGCAACAGGCAAGGGACTTTTAGAGAATTTTGGAGTAACGTCTCCCCTGCCTAGTGTGGCCTTGGCAGTTACCGCATTGGTTGGCGTACTGACTGCAGTTTTCATCTTCCAATCAGCTACCAAAAACTGA 1311 51.49 MAATTNPDPIQTNPTLNPPPNKRIFILSGQSNMAGRGGVLKKPHRWDGVVPPEAQPHPSIFRLSAKKQWEVAREPLHADIDTEKTCGVGPGMVFANGVRERVGTVAVVPCAVGGTAIREWARGEKLYEEMVKRARYSVKDGGEIRAILWFQGESDTSTENDADAYQGKMEAFVANVRRDLALPSLPIIQVALASGSKYIEKVREAQLGMKMENLVCVDAKGLELQEDNLHLTTHAQIKRSTRGNLGFLKWQNGDENGNRQLLVSVYLAYWRRRDKELQERTQEFSGANRAPQMAVLQASASLSLATRDASFARTAPKVFPLHRGPLPNSYRLGTAFATGSPLVLISKPSGQKKHALKQNSVSIRCEQSTQQSNLDVWLGRFAMVGFAIAISVEIATGKGLLENFGVTSPLPSVALAVTALVGVLTAVFIFQSATKN 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7010699 7018933 - CcPI632755_02g006950.1 Cco02g0695 171452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0695 436 SUPERFAMILY SGNH hydrolase 24 253 - -
Cco02g0695 436 SUPERFAMILY Chlorophyll a-b binding protein 375 418 - -
Cco02g0695 436 Gene3D SGNH hydrolase 21 246 IPR036514 -
Cco02g0695 436 MobiDBLite consensus disorder prediction 1 22 - -
Cco02g0695 436 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 238 IPR005181 -
Cco02g0695 436 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 15 239 IPR052940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0695 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0695 Cco-Chr2:7010699 Cco08g0824 Cco-Chr8:20090947 4.60E-46 dispersed
Cco02g0695 Cco-Chr2:7010699 Cco05g2289 Cco-Chr5:31567220 2.00E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g616 . . . Bda08g00771 . . . . Cmo19g00598 Cmo11g01390 . . . . . Cpe04g00302 Cpe15g00470 . . . . . . . Cla02g00632 . Cec02g0671 Cco02g0695 . . Cre02g0988 . Cone8ag1110 . . Lsi03g00528 Csa07g00726 . Cme01g00082 . . . . . . . . . . . Cma11g01725 Cma19g00582 Car11g01116 Car19g00444 . . . . . . . . . . . . . . . . . . Chy01g00087 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34