Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0699 ATGGGCCAAGAAATGATATCATTCGGCCCAGTAGACGTCAAGATGGGCCGTGTAGCCGATATACCTCGGCTTATTTTCTATACGAAATCCCTCGTTTTCGTTGTTCGTTTCCTAAACCGGCCCCCCGCCATGGTACTTCGTGCGCTCCTCCGTCGTTCCGTCATCCTCCGTACTTCCCCATCTTCGGCCGCTCCAGGCGGCGGAAGCTTCCATTTCTCAATTTTTCATGAGTTGAAGTCCACCTTAGCCTTGAGTAACACCACCGAAAACGTATCCCAACAGAATAATGAAAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATACACTACAACTGTAAACGGCTCGGTTTTAGGTAATCGCATATTGAACAGAGGAGCTCAAGCCGAAGCAGAAGCTTCCACGGTTTCAAACACTGCTCTGAAATGGGTGATTCGTTGCTGCCCGGAGCTGCCGAGGAGTCTCGTGCAAAAGCTATTTCGACTGAGAAAGGTTCGAAGAGGTTCTTCTATAATTGAAAATTCTGAATGTAATTTGGAAGCTGGAGACCAACTTAAAAGAGTAGCAGCCAAGGACATTCTGAACGTAGGTGATCAAATTTTTCTCCCTATCTCCGTTCAAGTGTTCCCCAGAGAGAAAGCTCGGGGTTATTGCAATAAAGAAGAAGAGAAATTCATACACAGTTTAGTATTGTATAAGGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGCATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGATATGAATACTCGGAATCACCTCGACTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCTACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCGACACATGCAAACCATGTTGATAGTGAGAAAAAGTTTTTGGAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGATCGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATCAAATCTCATCATGGATACACTTGGTTGGAGCTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTACACTGTGCGGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAATTTGAAAGCATTTCATTCTAATTTCCACAAGAATCAAGGAAAGAAACAATCTCTCCCGTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGACTTTACCAGATGTTTCTTTTGCGCTGCATAATGATTCTCTAGATCATGACTGCTCAAGATTGGAACGTCTGGAGTTGGATGCTCCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAA 1545 43.37 MGQEMISFGPVDVKMGRVADIPRLIFYTKSLVFVVRFLNRPPAMVLRALLRRSVILRTSPSSAAPGGGSFHFSIFHELKSTLALSNTTENVSQQNNEKGSNRWFTLPPYTTTVNGSVLGNRILNRGAQAEAEASTVSNTALKWVIRCCPELPRSLVQKLFRLRKVRRGSSIIENSECNLEAGDQLKRVAAKDILNVGDQIFLPISVQVFPREKARGYCNKEEEKFIHSLVLYKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLRYEYSESPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASTHANHVDSEKKFLEKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNLKAFHSNFHKNQGKKQSLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7097299 7100659 - CcPI632755_02g006990.1 Cco02g0699 171456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0699 514 CDD PseudoU_synth_RluA_like 237 473 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cco02g0699 514 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 145 511 IPR050188 GO:0000455(PANTHER)|GO:0009982(PANTHER)
Cco02g0699 514 SUPERFAMILY Pseudouridine synthase 225 511 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cco02g0699 514 Gene3D Pseudouridine synthase 218 481 - -
Cco02g0699 514 Pfam RNA pseudouridylate synthase 237 408 IPR006145 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0699 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0699 Cco-Chr2:7097299 Cco08g1228 Cco-Chr8:23994812 6.80E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012254 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29