Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0718 ATGAATTCTGATTCGTCTCGCTCGGCTAATTCCTCCGCCCACAGATCCAAGCGAATTCTCGTCAATTCATCTCCGTCGAACGCTTCCAGTAGCAGTGGCAACAAAAAGAAACGGATCAATCAGAAAACCCTAGGCGTCTCATGGGGAGCCAATTCCATTTCATCCTCTCGCTCCTCTCGCAAATCCCCATTTTCAGATTTCGGAAGTTATATGGTAGAAAAGAACAGGAAACTTCACAATCAGTTTAACGTTGATGCTTCAAGTGCTTCACATAGTGGTACGAACTCAGGAAATCAAATATTTCAGGGCGTTTCTATCTTTGTTGACGGTTTCACGATTCCTTCAAGTCAGGAGTTGCGGGGTTATATGTTGAAGTATGGTGGAAGATTTGAGAACTATTTTTCAAGACATAGTGTTTCTCATATAATTTGCAGTAATTTACCGGACAGTAAAATAAAAAATCTCAGGTCCTTCAGCGGTGGACTCCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGTTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGACTATCAGAATTCTTTTCTATGAAAAAAGGTCCGACGCTGGAGAAACCCAAAATTTGCATGACTACTGAAAAGAAATATGGAGCAGAGGATTCACTGTCCCTGGTGGCTATGAAGTCAAGAGATACCACTTCGTCTGAAGTGAATGAAACAATAGAATATAGAGCAGAGATGCATTCCTCTGAAATGAATCTTCAAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAGCGATGACTTAGAGGCTGCCAAACTAAAGGATACAAATATATCTGATGTAAATGTATCTATTGAATATAAACCACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATGTAGAAGTACAGAAAGGGCCAAGCAATGAAAAATGTAATTATGCAGATGAAGAACCAGGAATTGATGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTGCCTCAACTCACAGCGGCAGCAACAATAATTATCATAGTGATGGATCATCAAGTTCTATGGCGGCTGGGTCTTCTAAGCTGCGGCATTCAACTCTTGGGAATCCAGATTTTGTGGAAAATTATTTCAAGAAGTCAAGGCTGCATTTCATTGGAACTTGGAGAAGTCGTTATTATAAGCGTTTTCCACGATCAGCTAATGGGTCCAATTCTGTGACTTCTCATATCAATGGTTCTTCCCACTATCAGTCTGCCACTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAATATTCCTGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGGGATGCAAAAGCTCTCTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCATTGTGAGAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTGGATATCTCGGGCGCAAACAAGGTAGATCCTGAGGTCTTGGCTTCAAAAATAAGAAAAGAAATTTTTGATACAACAGGATGTACTGCAAGTGCTGGAATAGCTACTAATATGCTAATGGCTCGCCTTGCCACTAGAACTGCAAAACCTGATGGTCAGTGTTACATTCCTTCAGAGAAGGTTGATGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCTGGAATAGGGCATGCCTTAGAGGAGAAGTTGAAGAAAAGAAGCATTTTGACTTGTGGTCAGCTGCGTATGATATCCAAGGACTCTCTTCAGAAAGACTTTGGATTAAAAACAGGGGAGATGTTATGGAATTATAGTCGGGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAACTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTTGAACCTTTGTAAGGAGGTTTCGTTACGGTTGCATGGATGTGGAGTGCAGGGGCGCACATTTACCCTCAAGATAAAAAAACGAAGAAAAGATGCTGATGAACCCACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCATTCATTGACGATTCCTGTTGCCACTGACGACCTGGAAATTCTTCAGAGGATTGTAAAGCAGCTTTTCGGGTTTTTTGTCATTGATGTCAAAGATATTCGTGGTATTGGTTTACAAGTTTCGAAAATTCAAAATGTGGGCATCTCCAAGGAAGGGATGAAAAGAAATTCTTTGGACTCATGGCTTAGTTCATCTGCAACTACAAATCTAGAAAATAGCACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAATGAGAAACAGAGTGTCTCTGGAACTTCAGATCAGTTATCTGCTGATCCTATAAGCCATCTGATTCAGATGGAGAATAACCAGCACCATTGTGAAGCTTTGAATCCGGTTTCAGCTCCACCTCTGTGCAATCTGGATGTTGGAGTTATAAGGAGCCTACCTCCTGAACTTTTTTCAGAGTTAAATGAAATCTACGGTGGGAAACTAATTGATCTCCTAGCTAAAAGCAGAGACAAGAATGAAGCTTTCTCCTCTTCTATAAGGGATCCGTCTCAAGGATTAGGAGGTGATGGACTTACTTTATCGGATATCCAAGGAAGCAAAATACAGTTGGAAAATAAGCATAATGTTGGACGTTCACAACCTGCACAGATTTCTGGGGAAGGATTGTGCAATTTGGTGACTCCTGTTCCCACATCTGGATCTCATACAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCATCAGTATTACAAGAGTTACCTGAACCACTGAGGGCTGACATACTTAAGCAACTCCCAGCACACAGGGAAAAAGAACTTGCTCTGGAATATTCAGTCAAAAATCATCAGGCATCATGCGGTGCTATTGGCAGTACATCTGGCTCAATTGATTCTTTGATGGAAAATGATCTTTGGTCTGGGAACCCACCTCTATGGGTTGATAAATTTAAAGCTAGCAATTGCTTGATATTAAACTTTCTTGCAGAGGTGTATACAGAAACAGGGTCACCGGGAAATCTGTATGGGATTTTGCTGAGGACTTTGTCTCAATCTTTGCATCCTTCAGCCGCAGATTCTTATGGTTGGGATGGTGCTGTCAATGGTTTATGTGAACTTCTTAAGCAGTACTTTAAGTTAAAGATAGAGTTGGATATCGAGGAGACCTATGTTTGTTTTCGTCTGCTTAAGAGGTTAGCAATGAAGTCACAGCTGTTTTTGGAAGTCTTCAACATTATTGATCCTTACCTTCAGGGGGCAGTCAATGAAATCTACGGCGGAAGTTTGAAGGTGTAG 3513 40.99 MNSDSSRSANSSAHRSKRILVNSSPSNASSSSGNKKKRINQKTLGVSWGANSISSSRSSRKSPFSDFGSYMVEKNRKLHNQFNVDASSASHSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRHSVSHIICSNLPDSKIKNLRSFSGGLPVVKPTWILDSVASNKLLSWVPYQLDQLVSNQPRLSEFFSMKKGPTLEKPKICMTTEKKYGAEDSLSLVAMKSRDTTSSEVNETIEYRAEMHSSEMNLQDNADAELNEKSSDDLEAAKLKDTNISDVNVSIEYKPQVCESFEMLPRKDADVEVQKGPSNEKCNYADEEPGIDDVGQSSEENISSLHGLSASTHSGSNNNYHSDGSSSSMAAGSSKLRHSTLGNPDFVENYFKKSRLHFIGTWRSRYYKRFPRSANGSNSVTSHINGSSHYQSATIIHVDMDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPHLVIFPYDFKSYEEVADQFYDILHKHCEKVQAVSCDEAFLDISGANKVDPEVLASKIRKEIFDTTGCTASAGIATNMLMARLATRTAKPDGQCYIPSEKVDDYLDPLPIKDLPGIGHALEEKLKKRSILTCGQLRMISKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTIPVATDDLEILQRIVKQLFGFFVIDVKDIRGIGLQVSKIQNVGISKEGMKRNSLDSWLSSSATTNLENSTGPLVKERANIDNEKQSVSGTSDQLSADPISHLIQMENNQHHCEALNPVSAPPLCNLDVGVIRSLPPELFSELNEIYGGKLIDLLAKSRDKNEAFSSSIRDPSQGLGGDGLTLSDIQGSKIQLENKHNVGRSQPAQISGEGLCNLVTPVPTSGSHTIDLLPSSLSQVDPSVLQELPEPLRADILKQLPAHREKELALEYSVKNHQASCGAIGSTSGSIDSLMENDLWSGNPPLWVDKFKASNCLILNFLAEVYTETGSPGNLYGILLRTLSQSLHPSAADSYGWDGAVNGLCELLKQYFKLKIELDIEETYVCFRLLKRLAMKSQLFLEVFNIIDPYLQGAVNEIYGGSLKV 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7377724 7389327 + CcPI632755_02g007180.1 Cco02g0718 171475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0718 1170 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Cco02g0718 1170 SMART BRCT_7 98 177 IPR001357 -
Cco02g0718 1170 SUPERFAMILY BRCT domain 69 189 IPR036420 -
Cco02g0718 1170 FunFam DNA repair protein REV1 454 508 - -
Cco02g0718 1170 CDD PolY_Rev1 388 788 - -
Cco02g0718 1170 Gene3D - 437 597 IPR043128 -
Cco02g0718 1170 MobiDBLite consensus disorder prediction 313 330 - -
Cco02g0718 1170 FunFam DNA repair protein REV1 674 795 - -
Cco02g0718 1170 CDD BRCT_Rev1 100 187 - -
Cco02g0718 1170 PIRSF REV1 50 1026 IPR012112 GO:0003684(InterPro)|GO:0006281(InterPro)|GO:0016779(InterPro)|GO:0042276(InterPro)
Cco02g0718 1170 Gene3D - 386 421 - -
Cco02g0718 1170 PANTHER DNA REPAIR PROTEIN REV1 1 1169 - GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0017125(PANTHER)|GO:0042276(PANTHER)|GO:0070987(PANTHER)
Cco02g0718 1170 MobiDBLite consensus disorder prediction 313 378 - -
Cco02g0718 1170 Pfam DNA polymerase-iota, thumb domain 612 664 IPR053848 GO:0003887(InterPro)
Cco02g0718 1170 Gene3D - 454 508 - -
Cco02g0718 1170 Gene3D BRCT domain 90 187 IPR036420 -
Cco02g0718 1170 Pfam impB/mucB/samB family C-terminal domain 674 790 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cco02g0718 1170 FunFam DNA repair protein REV1 495 597 - -
Cco02g0718 1170 MobiDBLite consensus disorder prediction 1 41 - -
Cco02g0718 1170 ProSiteProfiles UmuC domain profile. 437 618 IPR001126 GO:0006281(InterPro)
Cco02g0718 1170 Pfam BRCA1 C Terminus (BRCT) domain 99 174 IPR001357 -
Cco02g0718 1170 SUPERFAMILY DNA/RNA polymerases 433 668 IPR043502 -
Cco02g0718 1170 MobiDBLite consensus disorder prediction 338 378 - -
Cco02g0718 1170 Gene3D - 609 663 - -
Cco02g0718 1170 FunFam DNA repair protein REV1 93 188 - -
Cco02g0718 1170 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 673 786 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cco02g0718 1170 Pfam impB/mucB/samB family 440 587 IPR001126 GO:0006281(InterPro)
Cco02g0718 1170 Gene3D - 673 794 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0718 K03515 - - csv:101214381 2015.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0718 Cco-Chr2:7377724 Cco02g0752 Cco-Chr2:7835524 1.60E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32