Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0726 | ATGGACCCGCCGGAGTACCACAAGCCATCCGTCCGAACGTCGAAGAAGCGCGACTCGGAGGAGCACTCTTTGCAACAGGCCACTGCCAACAAGAGACCCGTACTTGGCGAGATCACTAACTCATTGATCTTCAGTTCGAGCCAGTGCTCCTTTTCTGATCAGGAGATGACGGATAAGGATCTGGACAAAGAGGAACTACCTGAAGGAAGGTCTGCTGACTGTTCGGAGAAATCTGGCTCTGCATTTAGCATTTATAACCATCTTCGATCTCTGGAGATGGAATTACACGTGAAGTTACTGTCCAACAACATTGAAAAGGCTTACAATAATGATTCCAGTTTAACTTTCACTCGTATGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTGTCGGACACCGTATATCTCACCATATCACATATTGACAGATACCTATCCTGGCATGCTGTTGACAGAAGCAAGCTACAACTTCTTGGCGTTTGTTGCATGCTAATTGCATCGACGCATGAAGAGATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACGCAAATTCTTGACCTGTGAAGGCGCCCCCACGATAAAAGTTTTCCTCAGAATATATACAAAAGTTGCTTTAGAAAATTGGAAGCAGGCTCAAGATTTGCAATTTGAGTTATTGAGTTGTTATCTCGCGGAGCTAAGTTTGTTAGATCACCGTTGTGTACATATCTTACCTTCAAAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCTTGGTGTTTTGCACTACAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTGGCAATCAGAGACAAGTACAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCACCCTCAGAAATTCCTGCATATTATTTTGAGGACATTGATCAGCAATCATTCAACGGGTTCTTAAGAACTTAA | 1092 | 42.49 | MDPPEYHKPSVRTSKKRDSEEHSLQQATANKRPVLGEITNSLIFSSSQCSFSDQEMTDKDLDKEELPEGRSADCSEKSGSAFSIYNHLRSLEMELHVKLLSNNIEKAYNNDSSLTFTRMREILVDWLVEVAEEYKLVSDTVYLTISHIDRYLSWHAVDRSKLQLLGVCCMLIASTHEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKFLTCEGAPTIKVFLRIYTKVALENWKQAQDLQFELLSCYLAELSLLDHRCVHILPSKVAASAIFLSRFTIQPEKHPWCFALQRYSGYRPSELKECILAIHDLQLNRKGSSLLAIRDKYKQHKFKCVAELSSPSEIPAYYFEDIDQQSFNGFLRT | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7477161 | 7480317 | - | CcPI632755_02g007260.1 | Cco02g0726 | 171483 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0726 | 363 | SMART | Cyclin_C_2 | 217 | 341 | IPR004367 | - | |
Cco02g0726 | 363 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cco02g0726 | 363 | PIRSF | Cyclin_A_B_D_E | 2 | 348 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cco02g0726 | 363 | PANTHER | CYCLINS | 59 | 329 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco02g0726 | 363 | SUPERFAMILY | Cyclin-like | 84 | 212 | IPR036915 | - | |
Cco02g0726 | 363 | MobiDBLite | consensus disorder prediction | 54 | 75 | - | - | |
Cco02g0726 | 363 | MobiDBLite | consensus disorder prediction | 55 | 72 | - | - | |
Cco02g0726 | 363 | SUPERFAMILY | Cyclin-like | 217 | 342 | IPR036915 | - | |
Cco02g0726 | 363 | FunFam | Cyclin A1 | 202 | 337 | - | - | |
Cco02g0726 | 363 | Gene3D | - | 97 | 215 | - | - | |
Cco02g0726 | 363 | SMART | cyclin_7 | 125 | 209 | IPR013763 | - | |
Cco02g0726 | 363 | SMART | cyclin_7 | 221 | 310 | IPR013763 | - | |
Cco02g0726 | 363 | Pfam | Cyclin, N-terminal domain | 108 | 211 | IPR006671 | - | |
Cco02g0726 | 363 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cco02g0726 | 363 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 289 | 363 | IPR005818 | GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro) | |
Cco02g0726 | 363 | Pfam | Cyclin, C-terminal domain | 217 | 340 | IPR004367 | - | |
Cco02g0726 | 363 | Gene3D | - | 84 | 337 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0726 | Cco-Chr2:7477161 | Cco05g2298 | Cco-Chr5:31630106 | 6.00E-84 | dispersed | |
Cco02g0726 | Cco-Chr2:7477161 | Cco08g1812 | Cco-Chr8:29187366 | 1.70E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0726 | K06627 | - | csv:101213896 | 623.624 |