Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0726 ATGGACCCGCCGGAGTACCACAAGCCATCCGTCCGAACGTCGAAGAAGCGCGACTCGGAGGAGCACTCTTTGCAACAGGCCACTGCCAACAAGAGACCCGTACTTGGCGAGATCACTAACTCATTGATCTTCAGTTCGAGCCAGTGCTCCTTTTCTGATCAGGAGATGACGGATAAGGATCTGGACAAAGAGGAACTACCTGAAGGAAGGTCTGCTGACTGTTCGGAGAAATCTGGCTCTGCATTTAGCATTTATAACCATCTTCGATCTCTGGAGATGGAATTACACGTGAAGTTACTGTCCAACAACATTGAAAAGGCTTACAATAATGATTCCAGTTTAACTTTCACTCGTATGCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTGTCGGACACCGTATATCTCACCATATCACATATTGACAGATACCTATCCTGGCATGCTGTTGACAGAAGCAAGCTACAACTTCTTGGCGTTTGTTGCATGCTAATTGCATCGACGCATGAAGAGATCAGTCCTCCACATGTTGAAGACTTCTGCTATATAACAGATAATACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACGCAAATTCTTGACCTGTGAAGGCGCCCCCACGATAAAAGTTTTCCTCAGAATATATACAAAAGTTGCTTTAGAAAATTGGAAGCAGGCTCAAGATTTGCAATTTGAGTTATTGAGTTGTTATCTCGCGGAGCTAAGTTTGTTAGATCACCGTTGTGTACATATCTTACCTTCAAAAGTCGCTGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCTTGGTGTTTTGCACTACAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTGGCAATCAGAGACAAGTACAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCACCCTCAGAAATTCCTGCATATTATTTTGAGGACATTGATCAGCAATCATTCAACGGGTTCTTAAGAACTTAA 1092 42.49 MDPPEYHKPSVRTSKKRDSEEHSLQQATANKRPVLGEITNSLIFSSSQCSFSDQEMTDKDLDKEELPEGRSADCSEKSGSAFSIYNHLRSLEMELHVKLLSNNIEKAYNNDSSLTFTRMREILVDWLVEVAEEYKLVSDTVYLTISHIDRYLSWHAVDRSKLQLLGVCCMLIASTHEEISPPHVEDFCYITDNTYTKEQVLNMEREVRKFLTCEGAPTIKVFLRIYTKVALENWKQAQDLQFELLSCYLAELSLLDHRCVHILPSKVAASAIFLSRFTIQPEKHPWCFALQRYSGYRPSELKECILAIHDLQLNRKGSSLLAIRDKYKQHKFKCVAELSSPSEIPAYYFEDIDQQSFNGFLRT 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7477161 7480317 - CcPI632755_02g007260.1 Cco02g0726 171483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0726 363 SMART Cyclin_C_2 217 341 IPR004367 -
Cco02g0726 363 MobiDBLite consensus disorder prediction 1 31 - -
Cco02g0726 363 PIRSF Cyclin_A_B_D_E 2 348 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco02g0726 363 PANTHER CYCLINS 59 329 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco02g0726 363 SUPERFAMILY Cyclin-like 84 212 IPR036915 -
Cco02g0726 363 MobiDBLite consensus disorder prediction 54 75 - -
Cco02g0726 363 MobiDBLite consensus disorder prediction 55 72 - -
Cco02g0726 363 SUPERFAMILY Cyclin-like 217 342 IPR036915 -
Cco02g0726 363 FunFam Cyclin A1 202 337 - -
Cco02g0726 363 Gene3D - 97 215 - -
Cco02g0726 363 SMART cyclin_7 125 209 IPR013763 -
Cco02g0726 363 SMART cyclin_7 221 310 IPR013763 -
Cco02g0726 363 Pfam Cyclin, N-terminal domain 108 211 IPR006671 -
Cco02g0726 363 MobiDBLite consensus disorder prediction 1 25 - -
Cco02g0726 363 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 289 363 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco02g0726 363 Pfam Cyclin, C-terminal domain 217 340 IPR004367 -
Cco02g0726 363 Gene3D - 84 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0726 Cco-Chr2:7477161 Cco05g2298 Cco-Chr5:31630106 6.00E-84 dispersed
Cco02g0726 Cco-Chr2:7477161 Cco08g1812 Cco-Chr8:29187366 1.70E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0726 K06627 - csv:101213896 623.624