Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0742 ATGGTGGCTGCCATTTCTGGAGCAGCAGCTTCAATCCCGAAAACTTCGACCCAACAACGCAATGAGCAGCAACAGCAAGATCATCACCTTAGAAACCAAGCAAGGCCTCCATTGTTACCTTCTGAGAGAGATAATGGGGTTCTTCAACGAAAACCTAGAGGCAGACAGGTTCCTTCCAGGTACATGTCTCCTTCGCCTTCCTCTTCTACTTCTACTTCTTCAACTACTTCATCCTCGGCTTCTTCTCGGCGATTTCCCTCTCCATTGCTCTCTAGGTCCACTAATTTGACCCCTGCTTCCACCCCATTGCCTTCCTCTGGCCCTAAACGCTCTCAATCGGTGGACCGGAGACGACCAACCACCCCCCGGTCGATTACTCCGGTTCTTGATTCGAGACACGGCAATGCGACTGAGAGTACGGCGGCTGCGAAGCTTTTGGTCACTTCTACCCGGAGTTTGTCGGTTTCGTTTCAAGGGGAAGCGTTTTCCCTTCCGATTAGTAAGACTAAGGCTACTGCGACGCCGAGTTTGAGTAATGCGAGAAAGGGTTCGACGCCGGAACGGCGTCGAGCGACACCACTTAGGGATAAGAGCGATGGGTCTGGAGTTCAGGTGGAGAATTCGAAGCTTCTTGATCAACATCGTTGGCCGGCGAGGAACCGCCATGCGAATTTGGACGCGAACCCGTTGTCGAGGAGTTTCGATTGCGGAGCCGAGCAGAAGAAAGTGAATGGAATTGGATCTGGGATGGTGGTTCGAGCGTTACAGCAAACAACACCAGATGACAGTAGAAGAGCTTCTTTTGACGGTAGATTGAGCTTGGATTTAAACAGTTCCGAGTTGTTGAAGGCAGTTCGGCAAAGCCCAGATGCCGATTCAGTGAATGAATCTTCTGTGCCTTCTGATCTCACTACTTCTGATACGGATAGTGTTTCCTCCGGCAGTACTTCAGGAGTTCAAGATTGTGGTTCGGCAGCCAAAGGGCGAAATGGGCCTCGAGGGATTGTTGTATCAGCGAGGTTTTGGCAAGAAACAAACAGTCGGCTGCGGCGCTTGCATGATCCTGGTTCTCCTTTATCGACTAGTCCTGGGGCAAGAGTAGGAGCCCCATCAAAGTTCAATCAGTCTAAACGGTTCTCAAATGATGGTCCACTTTCATCTCCACGTACTATGGCTTCCCCAATTCGAGGTGGGACAAGGCCTCCATCCCCAAGTAAGCTTTGGACTTCTTCAGTATCATCACCATCAAGGGGAATTTCCAGTCCTTCCAGGACGAGAAATGGTGTCGGTGGTTCCTTGGTTAGTAACTCCATTAGTACGCCCTCCATTCTCAGTTTCTCTGTTGACATCCGGAGAGGGAAGATGGGGGAAGATCGCATTGTTGATGCACACGTATTGAGGCTTCAGCATAACCGTTACTTGCAATGGCGGTTTGTGAATGCAAGGGCCGATGCTACGTTCATGTTGCAGAGACTAAACGCAGAGAGGAATGTTTGGAATGCATGGGTCACTATCTCAGAACTACGGCATACTGTTACACTCAAAAGAATCAAGTTATTATTACTACGGCAAAAACTGAAGCTGACATCCGTCCTCAAGGGACAGATAAGTTATTTGGAAGAATGGGCTCTTTTAGACAGAGATCACTCGAGCTCCATGCTGGGAGCAACTGAGGCTTTGAAGGCCAGTACTCTACGGCTCCCAGTTGTTGGGAAAGCAATTGCTGATATTCAGAACCTGAAAGATGCTGTGGGTTCAGCTGTTGATGTTATGCAGGCAATGGCATCTTCAATATGCTCTCTCTCATCTAAGGTAGAAGAAACAAACTCCGTGGTGGCTGAACTGGTTAAGGTGACGGCAAAGGAACGGATTTTACTTCAACAATGTGAAGATTTTTTGTCCACTTTAGCAGCCATGCAGGTTAAAGATTGTAGCTTGCGAACGCACATATTGCAACTGAATCGATTTCCAACGAGACAACAGCCTAACAAATACATGTAG 2001 48.68 MVAAISGAAASIPKTSTQQRNEQQQQDHHLRNQARPPLLPSERDNGVLQRKPRGRQVPSRYMSPSPSSSTSTSSTTSSSASSRRFPSPLLSRSTNLTPASTPLPSSGPKRSQSVDRRRPTTPRSITPVLDSRHGNATESTAAAKLLVTSTRSLSVSFQGEAFSLPISKTKATATPSLSNARKGSTPERRRATPLRDKSDGSGVQVENSKLLDQHRWPARNRHANLDANPLSRSFDCGAEQKKVNGIGSGMVVRALQQTTPDDSRRASFDGRLSLDLNSSELLKAVRQSPDADSVNESSVPSDLTTSDTDSVSSGSTSGVQDCGSAAKGRNGPRGIVVSARFWQETNSRLRRLHDPGSPLSTSPGARVGAPSKFNQSKRFSNDGPLSSPRTMASPIRGGTRPPSPSKLWTSSVSSPSRGISSPSRTRNGVGGSLVSNSISTPSILSFSVDIRRGKMGEDRIVDAHVLRLQHNRYLQWRFVNARADATFMLQRLNAERNVWNAWVTISELRHTVTLKRIKLLLLRQKLKLTSVLKGQISYLEEWALLDRDHSSSMLGATEALKASTLRLPVVGKAIADIQNLKDAVGSAVDVMQAMASSICSLSSKVEETNSVVAELVKVTAKERILLQQCEDFLSTLAAMQVKDCSLRTHILQLNRFPTRQQPNKYM 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7679266 7690861 + CcPI632755_02g007420.1 Cco02g0742 171499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0742 666 MobiDBLite consensus disorder prediction 349 433 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 284 331 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 60 110 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 403 433 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 367 388 - -
Cco02g0742 666 Pfam QWRF family 310 627 IPR007573 -
Cco02g0742 666 MobiDBLite consensus disorder prediction 284 323 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 118 136 - -
Cco02g0742 666 MobiDBLite consensus disorder prediction 172 206 - -
Cco02g0742 666 PANTHER AUGMIN FAMILY MEMBER 34 659 - GO:0005737(PANTHER)|GO:0005813(PANTHER)|GO:0005880(PANTHER)|GO:0007098(PANTHER)|GO:0008017(PANTHER)|GO:0051225(PANTHER)
Cco02g0742 666 MobiDBLite consensus disorder prediction 1 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0742 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0742 Cco-Chr2:7679266 Cco05g2312 Cco-Chr5:31699474 1.30E-129 dispersed
Cco02g1558 Cco-Chr2:28263773 Cco02g0742 Cco-Chr2:7679266 2.00E-64 transposed
Cco06g1445 Cco-Chr6:24909534 Cco02g0742 Cco-Chr2:7679266 8.20E-51 transposed
Cco02g0742 Cco-Chr2:7679266 Cco08g1824 Cco-Chr8:29267824 2.90E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g691 Blo02g00934 Blo03g00075 Bda06g01204 . Bpe07g00273 . Bma05g00655 . Cmo19g00571 Cmo11g01414 . . . . . Cpe04g00322 Cpe15g00445 . . . . . . . Cla02g00676 Cam02g0709 Cec02g0721 Cco02g0742 Clacu02g0716 Cmu02g0713 Cre02g1027 . . Cone3ag1024 Cone10ag1039 Lsi03g00569 Csa07g00691 . Cme01g00114 . . . . . Bpe05g00476 . . . . . Cma11g01704 Cma19g00558 Car11g01138 Car19g00416 . . . . . . . . . . . . . . . . . . Chy01g00125 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005063 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 2 41