Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0747 ATGGAGCAACTCAATGGAAGCTTCACAGCTGATGATCAAGAAGAAGAAGCAACTTTCATGGCTCAATTACTCTTCAACACCACAAATTCCCCTGACCCTTTCATGGCTGCCCTTCCCTATGAAACACCTTCTTCTTCAACCTTTTATAGCCTTTCTCAACAGACTAGTAATGGAAGTTATTGCAGCCAATTATTATTCCCCACAACTGAAAATAATAATAATTATTATTATTCTTGCAATCCCATGAAGAATAATAATAATAATAATAATAATAATAATAATTCTTCATTGGGTGAGCTTGGAGATTATTACAATAACAATGGTGATAATTTCCACACTGAGGGTTATGAGGACTCTATGAATCTAGAGGTGAGTGAGAATAATTTTCAGCCTTGTCTTGAAGAAGCTGCCCATAACCAACTTGAGATCAATTGCAAGAAAAGATCAAGGGGAGGATTTGGGGATCATGTAGAGAAGGGGAGGAATGAGAGGCTAAAGAAAACTCAAAGGCTTATTACCTCAAGCAGCAACACTGAAGAAGATGACAATGCTGGCCCTAGCAGGCAAAGCACAAGCAACTATTGCTCGGAAGACGAATCCAACACCTCTCTCGATCGAAACGGAGGAGCTAATAACTCGAGATCGAGTCCGAATGGTCCTACCAAATCCCGAGCCAGCAGAGGCTCAGCCACAGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATCAATGAGAGGTTGAGAATCTTACAGAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTCCAAATCAAGCTATTAAGCTCTGATGATTTATGGATGTACGCTCCGATCGCTTACAACGGGATGGATATCGGACTTAATCCGACCACCCCGAAAACACCAAAAGAGAAAGAATTATGA 957 40.44 MEQLNGSFTADDQEEEATFMAQLLFNTTNSPDPFMAALPYETPSSSTFYSLSQQTSNGSYCSQLLFPTTENNNNYYYSCNPMKNNNNNNNNNNNSSLGELGDYYNNNGDNFHTEGYEDSMNLEVSENNFQPCLEEAAHNQLEINCKKRSRGGFGDHVEKGRNERLKKTQRLITSSSNTEEDDNAGPSRQSTSNYCSEDESNTSLDRNGGANNSRSSPNGPTKSRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTTPKTPKEKEL 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7773699 7775913 + CcPI632755_02g007470.1 Cco02g0747 171504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0747 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 298 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco02g0747 318 FunFam Basic helix-loop-helix transcription factor 230 287 - -
Cco02g0747 318 MobiDBLite consensus disorder prediction 148 168 - -
Cco02g0747 318 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983(InterPro)
Cco02g0747 318 MobiDBLite consensus disorder prediction 148 242 - -
Cco02g0747 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 295 IPR036638 GO:0046983(InterPro)
Cco02g0747 318 CDD bHLH_AtIND_like 230 292 - -
Cco02g0747 318 SMART finulus 235 284 IPR011598 GO:0046983(InterPro)
Cco02g0747 318 MobiDBLite consensus disorder prediction 169 233 - -
Cco02g0747 318 Gene3D - 228 286 IPR036638 GO:0046983(InterPro)
Cco02g0747 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0747 Cco-Chr2:7773699 Cco05g2315 Cco-Chr5:31736835 8.30E-37 dispersed
Cco10g1016 Cco-Chr10:21824618 Cco02g0747 Cco-Chr2:7773699 8.50E-46 wgd
Cco02g0747 Cco-Chr2:7773699 Cco08g1827 Cco-Chr8:29297293 5.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58735 PF00010 HLH 1.20E-08 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0747 - - - 0.0