Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0752 ATGACAAGAAGATATTGGAACATCCATTTGGAGGAGATGATGAAAGCAAGAGTTCGTCTTGGTCATGAAACGAGACTTCATAAGTTCAAGGACTTGAGAACAGAACAAAAGACGGGCCCGAGGCAGACTTTTTCCCATTCATCTTCCAGGGGAAGCTTCAGCTTCGAGACCTTGAGGAAAATGGAAAAGAAGGAAACTGCTGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTGCAAAAAATTGTCTATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAGGATGCGAGCTAGGTGTGCACAGCTTACTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAACATGTCTATGCTTTCTACTGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTTGTTCCCATGGATTTCGAAAAGTATAACTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACAAGTGAAGAAATTGCCAAGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTGCTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGTGAGGAGATGCTACTAAAGGGGGGTCACCTCTGTGCGTTGTTTTCTCAATCCTCAGCAGATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACTGATACTCCACAGGTTAGATTGCGAAAGAGTATCAGCAATGAAAGAACTTTTGCAGCCACCACTGATGAAAGATTAATTTTTCAGAAACTTGCTGACCTTGCGGAGATGCTGTCAATGGACATGGACAAGGAAGGTCTAACTGGGCGGACACTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAAAAATATATTTGCTCCAGCAGTGACATTTTGCAACATGCATCAAGGCTACTAAAGGCTGAACTGCCCATTTCTCTAAGACTAATTGGGCTGCGGATATCTCACTTCAATGAAGATGGAGCCATTGCTGGGTCTGATCCGACCCAAACATCCATTACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGATTATGGGTGATTGTTTCTCCTTGAATCATGATTCTAACAATCATGGTATCCTGGATGACACCGAAATTGATGTATGCATCAATGGTACTGATTCTGAAACACACCATCAAGATAGTAGTGATCAAAGAATCGACAACAATTTCTCGAATATGGATGACAGCAACTGTACGTCCAGCAATGACGCTGAGAAGTTGGAGAAACTTAAGAACCTTTGGAGCAACGTCAGCACTGATCAGGCAAATATTTTTAATACAGTAGGAAGCACCTCAGATTCCTCGGACGCTTTAGTCCCTCGAGTCTCGAGCACAGCATGTGCTTCATCAATAAACCTTGAAGGCAATCCCAAGAATAGTGTGGATACCAAAAATCAGTTCGAGGTAAGATCACCAGATAACAATGGACAGATTTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTACCAGTGAGTTTCGTCGATGAAAGACAAGAGCACATAGATTTCCACATTGCGGAAAAACTTCAGGAAGAAGAATCTGGCATTCGTTCAAGAACCCTTACGCCCAGGAAAAGGACTCCTGACAAGAATCTACTGTCAAGTCAAAGGAAGCACAAAAAGCAAAAGTCAACTCCAAAGAAAGAGGAGCCTGGTCGAGTCTACCAACTGCAACAGTCGAAACAAGTGGAGATGACATTGAACTCTAACCTCCAACATTATCCTCCTATGCATAGGGGGCAAAGCAAAACAAAAACAAGGGAAAACAATCATTCATCAATGTCAATTTGCATTGTTAATTTGATGTCGGTTCTTTCTAGATTTGATAACGAGACATGA 2397 41.89 MTRRYWNIHLEEMMKARVRLGHETRLHKFKDLRTEQKTGPRQTFSHSSSRGSFSFETLRKMEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQKIVYEMSKGSKYFENEERKEAAIREKIERMRARCAQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLKGKPMAVGNMSMLSTANYEARKYGVRAAMPGFIARRLCPELIFVPMDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEEMLLKGGHLCALFSQSSADYFLSVGLGLGSTDTPQVRLRKSISNERTFAATTDERLIFQKLADLAEMLSMDMDKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDGAIAGSDPTQTSITRFITSGDASRKIMGDCFSLNHDSNNHGILDDTEIDVCINGTDSETHHQDSSDQRIDNNFSNMDDSNCTSSNDAEKLEKLKNLWSNVSTDQANIFNTVGSTSDSSDALVPRVSSTACASSINLEGNPKNSVDTKNQFEVRSPDNNGQIWWIDDYKCTICGAEVPVSFVDERQEHIDFHIAEKLQEEESGIRSRTLTPRKRTPDKNLLSSQRKHKKQKSTPKKEEPGRVYQLQQSKQVEMTLNSNLQHYPPMHRGQSKTKTRENNHSSMSICIVNLMSVLSRFDNET 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7835524 7847647 - CcPI632755_02g007520.1 Cco02g0752 171509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0752 798 Hamap DNA polymerase IV [dinB]. 160 512 IPR022880 GO:0003887(InterPro)
Cco02g0752 798 Gene3D - 81 167 - -
Cco02g0752 798 MobiDBLite consensus disorder prediction 700 744 - -
Cco02g0752 798 Coils Coil 110 137 - -
Cco02g0752 798 MobiDBLite consensus disorder prediction 556 580 - -
Cco02g0752 798 Pfam impB/mucB/samB family C-terminal domain 399 501 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Cco02g0752 798 ProSiteProfiles Zinc finger UBZ3-type profile. 661 698 IPR041298 -
Cco02g0752 798 MobiDBLite consensus disorder prediction 756 776 - -
Cco02g0752 798 FunFam DNA polymerase IV 396 502 - -
Cco02g0752 798 Pfam impB/mucB/samB family 166 310 IPR001126 GO:0006281(InterPro)
Cco02g0752 798 MobiDBLite consensus disorder prediction 38 53 - -
Cco02g0752 798 MobiDBLite consensus disorder prediction 32 53 - -
Cco02g0752 798 MobiDBLite consensus disorder prediction 700 721 - -
Cco02g0752 798 ProSiteProfiles UmuC domain profile. 163 343 IPR001126 GO:0006281(InterPro)
Cco02g0752 798 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 72 735 IPR050116 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0042276(PANTHER)
Cco02g0752 798 FunFam DNA polymerase kappa subunit 223 318 - -
Cco02g0752 798 Gene3D - 397 501 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cco02g0752 798 CDD PolY_Pol_IV_kappa 164 496 IPR022880 GO:0003887(InterPro)
Cco02g0752 798 Gene3D - 319 392 - -
Cco02g0752 798 FunFam Polymerase (DNA directed) kappa 173 225 - -
Cco02g0752 798 SUPERFAMILY DNA/RNA polymerases 137 391 IPR043502 -
Cco02g0752 798 FunFam DNA polymerase kappa subunit 80 170 - -
Cco02g0752 798 Gene3D - 180 228 - -
Cco02g0752 798 Gene3D - 168 318 IPR043128 -
Cco02g0752 798 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 397 494 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Cco02g0752 798 FunFam DNA polymerase kappa 268 392 - -
Cco02g0752 798 Pfam Ubiquitin-Binding Zinc Finger 664 698 IPR041298 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0752 K03511 - - csv:101212452 1185.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0718 Cco-Chr2:7377724 Cco02g0752 Cco-Chr2:7835524 1.60E-32 dispersed
Cco02g0752 Cco-Chr2:7835524 Cco04g2366 Cco-Chr4:37111847 3.40E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30