Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0772 ATGGCAACCTCAGGCCAGTCGCTCCGCTCCTCCTCCGGTGCCACTAGCGGAGGCAACTTAGACTCCCTCAACCGTATCCTCTCCGACCTCTGCACTCGCGGTCATCCCAAGGAGGGGGCTCCATCTGCATTAAAGAAACACATTGAAGAAGCAGCTCGTGATCTTAATGGGGAAGCATTTTCCCGGTTCATGGATCAATTATATGATCGTATTTCTACTCTTTTAGAAAGTAATGATGTAGCTGAAAATTTGGGAGCTTTAAGGGCTATTGATGAGTTGATTGATGTGGCTCTGGGTGAAAATGCTTCAAAAGTTTCAAAGTTCTCTAATTATATTAGGAATGTATTTGAGCTGAAACGTGATCCTGAAATTTTGGTCCTCGCTAGCCGAGTTTTGGGTCATCTAGCTAGAGCAGGTGGAGCAATGACAGCAGATGAAGTTGAACACCAGGTAAAAATTGCTTTGGACTGGTTGCGTGGGGAAAGGATCGAGTATCGTCGCTTTGCTGCTGTCCTAATCTTGAAGGAAATGGCTGAAAATGCTTCGACAGTCTTCAATGTGCATGTACCAGAATTTGTCGATGCCATTTGGGTTGCTTTGCGGGATCCACAGCTAGCCGTTCGGGAGCGGGCTGTGGAGGCATTGCGTGCTTGCCTTCGTGTTATTGAAAAGCGTGAGACACGTTGGCGTGTGCAATGGTACTATCGAATGTTTGAAGCCACACAAGATGGGTTGGGTAAAAATGCTCCTGTTCACAGCATACATGGTTCCTTACTTGCAGTTGGCGAGCTTTTGAGGAATACAGGTGAATTCATGATGTCAAGATATAGAGAAGTTGCCGAAATTGTCCTTAGGTACCTGGAACACCGGGACCGTCTTGTACGCTTGAGCATAACTTCATTATTACCTCGAATCGCTCATTTTTTACGTGATAGATTCGTGACAAACTATTTAACGATATGCATGAATCATATTCTCACTGTTTTGAGAACACCAGCTGAGCGTGCCAGTGGGTTCATTGCCCTTGGGGAGATGGCTGGTGCTTTAGATGGGGAACTCAAACACTATTTGCCGACTATTACAAATCACTTACGTGATGCAATTGCTCCACGTCGTGGTAGACCCTCACTTGAGGCTTTGGCTTGTGTTGGAAGCATTGCAAAAGCCATGGGACCTGCTATGGAATCTCACGTTCGAGGTCTCTTGGATGTTATGTTCTCAGCTGGTCTTTCCCCTACACTTGTAGAATCCCTGGAGCAAATTACTATCAGTATACCCTCTTTGCTTCCCAGTATTCAAGAGCGGCTTTTAGATAGCATTTCAATGGTTCTATCAAAATCACATTCTCCTCAGGGTAGGCCTGCTGCTGTGGTGGGGCGGGGAAATGTGATGACAGTACCTCAGCCAGTTTCAGATCTTTGTGGTTCATCTCTTGTGCAGCTTGCATTGCAAACACTTGCTCGGTTTAACTTCAAGGGTCATGACCTTCTTGAGTTTGCACGGGAATCGGTTGTTGTGTATCTGGATGATGAAGATGGAGCAACACGTAAAGATGCTGCACTATGTTGCTGCAGATTAGTTGCAAATTCTTTTTCTGTCATGACATGCACACAATTTGGTACTAGTAGGTCTAGTCGTGCAGGTGGGAGACGTCGTCGCCTTGTTGAGGAGCTGGTGGAAAAGCTTCTTATTGCAGCTGTTGCAGATGCTGATGTTGCTGTTCGCAATTCCATCTTTGTCTCTCTGCATGGAAATAGGGGTTTTGACGATTTTATAGCACAGGCTGATAGTTTGAGTGCAGTCTTCGCTGCACTTAATGATGAGGATTTTGATGTTCGAGAGTATGCGATATCTGTTGCTGGGAGATTATCTGAAAAAAATCCTGCATATGTTCTTCCAGCTCTTCGTCGTCATCTTATACAATTGTTAACCTATTTGGACCAGAGTGCAGATAATAAATGCCGAGAAGAAAGTGCGAAGTTGCTGGGCTGTTTGATACGCAATTGTGAACGGTTAATACTTCCTTACATTGCTCCAGTTCACAAGGCACTTGTGGCAAGGCTTAGCGAAGGCACTGGAGTGAATGCCAATAATGGCATTATCACGGGAGTTCTTGTAACTGTTGGAGATCTTGCTAGAGTGGGTGGTTTTGCAATGAGACAATACCTTCCTGAACTCATGCCGTTGATTGTTGAAGCCCTATTGGATGGAGCTGCTGTTGCGAAGCGTGAAGTGGCTGTTTCTACCCTTGGTCAAGTTGTTCAGAGCACAGGGTATGTTATAACTCCGTACAATGAGTACCCTTTGTTGCTTGGCCTGCTGTTAAAATTGCTGAATGGTGAGCTTGCTTGGTCTACTAGACGTGAAGTATTAAAGGTTCTAGGAATAATGGGTGCTCTGGATCCTCATGTGCATAAAAGGAACCAAGCAAGCTTGCCAGGGTCACATGGAGAAGTAACACGTGCAGCAAGTGATTCTGGTCAACACATTCAATCTGTGGATGAACTTCCTATGGAGCTGTGGCCCTCGTTTGCGACATCTGAGGATTATTATTCCACGGTGGCAATTAATTCACTCTTGAGAATACTTCGGGATCCTTCCCTTGCGAGTTATCATCTTAAGGTGGTTGGATCGCTTATGTTCATATTCAAGTCTATGGGCCTCGGTTCTGTTCCATACTTACCCAAGGTTTTGCCCGATCTGTTCCACACTGTTAGCACGTGTGATGATACTTTAAAGGACTTCATAACGTGGAAACTTGGAACCTTAGTTTCTATTGTCCGCCAGCACATTCGCAAATATTTACCTGAATTGCTCTCTCTCATATCAGAATTGTGGTCATCCTTCAATTTTCCCTCTACCAGTCGTCCTCCGCTCGGCTATCCAGTTCTTCACTTAGTGGAACAACTTTGCTTAGCCCTCAATGATGAGTTCAGAATGATTCTCCACATTATTCTTCCTTGTTGTATTCAAGTTCTCAGTGATGCTGAACGGTGTAATGATTATACCTATGTTCTTGATATTCTTCACACTCTTGAAGTTTTTGGGGGCACTTTGGACGAACATATGCATCTTCTTCTTCCTGCACTTATTCGTTTATTCAAGGTGGATGCTCCGACAGACATAAGATGTGCTGCAATCAGAACTTTGACAAGATTAATCCCTCGTGTTCAGGTAACTGGCCATATATCTTCTCTTGTGCATCACCTGAAGCTCGTCTTGGATGGGAGGAATGATGAGCTCCAAAAAGATGCTGTTGACGCACTTTGTTGTCTAGCCCAGGCCCTTGGGGAAGATTTCACTGTTTTTATTCCATCAATACACAAGCTTCTATTGAAACATCGATTGCGGCATAAAGAATTTGAGGAAATTGAGGGACGTTTGCGTAGACGAGAGCCACTGATCTTGGGGAGCACTACTGCTCAGCGGTTGAGTCGGCGAGTTCCAGTGGAAGTCATCAGTGATCCTTTAAATGATAAAGACATTGACCCTTATGAAGATAGGTCTGATGTACATAAACAGTTTAGAGGTCACCAGGTTAATGATGGCAGATTGCGCACTGCTGGAGAGGCATCCCAGCGAAGTACTAAGGAAGATTGGGCTGAATGGATGAGGCATTTCAGTATTGAGCTTCTCAAGGAATCACCTTCACCTGCATTACGGACCTGTGCAAGACTTGCACAATTGCAGCCTTTTGTCGGGCGTGAGTTATTTGCAGCTGGTTTTGTTAGCTGTTGGGCACAACTAAATGAAATAAGTCAGAAGCAGTTAGTCCGGAGCTTGGAGATGGCATTTTCCTCCCCAAATATTCCTCCTGAAATTTTGGCAACGCTTCTAAACCTGGCGGAGTTTATGGAACATGATGAGAAGCCTCTTCCTATTGACATTCGTCTTCTTGGTGCTCTTGCAGAGAAGTGTCGTGCATTTGCCAAAGCTCTGCATTACAAAGAAATGGAATTTGAGGGTGCGAGGTCCAAGAAGATGGATGCCAATCCTGTTGCTGTAGTAGAAGCACTTATTCATATAAACAATCAGTTGCACCAGCATGAGGCTGCTGTCGGAATATTGACATATGCTCAACAACATTTGGGCGTTCAGCTGAAAGAATCTTGGTACGAGAAATTGCAACGCTGGGAAGATGCTCTTAAGGCATATACTGCCAAGGCATCACAAGCATCAAATCCACATCTTGTATTAGATGCCATGTTAGGACGGATGAGATGCCTTGCTGCATTGGCTCGTTGGGAAGAGCTTAATAACCTATGCAAAGAGTATTGGACCCCTGCCGAGCCAGCTGCTCGGCTAGAAATGGCTCCAATGGCTGCAAGTGCTGCGTGGAACATGGGAGAGTGGGACCAAATGGCAGAATATGTTTCTCGGTTAGATGATGGTGATGAAACTAAACTTCGTAGCTTGGGTAACACTGCTGCTAGTGGTGATGGAAGCAGTAGTGGAACTTTCTATAGGGCTGTCTTATTAGTTCGTAAAGGGAAGTATGATGAAGCACGTGAGTATGTCGACAGAGCTAGAAAATGTTTAGCAACCGAACTTGCTGCTTTGGTACTGGAGAGTTATGAACGTGCTTATAGCAATATGGTCAGAGTTCAACAACTTTCAGAACTAGAGGAGGTCATTGATTACTGCACACTTCCTGTTGGGAATTCTGTTGCTGAAGGGCGACGAGCTCTTATTCGAAATATGTGGACAGAACGCATACAAGGAGCAAAACGGAATGTTGAGGTCTGGCAAGCAGTATTGGCTGTTAGAGCTCTTGTGCTACCACCAACAGAAGATATTGAGACATGGCTAAAGTTTGCTTCTCTTTGTCGGAAAAGTGGGAGAGTCAGCCAGGCAAGATCTACTCTTGTTAAGCTCTTACAGTACGACCCTGAAACTTCTGAAAATGGATGGTATTCTGGGCCACCTCAAGTAATGTTGGCATACTTAAAATATCAATGGTCACTTGGGGAGGATATTAAACGCAAGGAAGCATTTGCTAGGTTGCAAGTTTTGTCTAGGGAGCTTTCATCTTCACCTATTGTTCAACCTGTCAAGCCAGTTAGCATGTCAAGTGGTAGAAGTTCAACTGTGCCACTGCTTGCTCGCGTATGCCTTGAACTTGGAACCTGGCAATGGGCCCTGTCTCCTGGGTTAGATGATGATTCTATACAAGAAATTCTGACTGCATTCCGGAATGCCACCCAGTGTGCGAATACTTGGGCAAAGGCATGGCACATGTGGGCGCTGTTTAATACGGCTGTGATGTCTCATTATACAATGAGAGGTTTTCCTGATGTTGCAGCACAGTTTGTTGTTGCTGCAGTAACAGGATATTTTCACTCTATAGCATGTGCTGCGAATTCTAAAGGTGTAGATGACAGTTTACAGGATATACTCCGTCTTCTCACTTTATGGTTCAACCATGGAGCCACTGCAGATGTCCAAATGGCACTACAAAAAGGATTTGCTCATGTAAATATCAACACATGGCTGGTAGTCTTGCCTCAGATAATTGCAAGGATACATTCAAATAACCATGCAGTAAGAGAACTCATACAGTCACTGTTGGTTCGAATTGGGCAAAGCCATCCTCAGTCCTTAATCCAAGAGGCGTTGGAACTTGCCAGGCCCAAAACACCTACACAACAAAAATCAAAGCACATACCAGGAGCATTAACATCAAATTTTGTTGGTGTTATTTCATTGGCCATTGTTCCAATGAGTGTTGATATAGAACTTTTCTTGTTGCTTATGTTTGAAGAG 5763 44.56 MATSGQSLRSSSGATSGGNLDSLNRILSDLCTRGHPKEGAPSALKKHIEEAARDLNGEAFSRFMDQLYDRISTLLESNDVAENLGALRAIDELIDVALGENASKVSKFSNYIRNVFELKRDPEILVLASRVLGHLARAGGAMTADEVEHQVKIALDWLRGERIEYRRFAAVLILKEMAENASTVFNVHVPEFVDAIWVALRDPQLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLTICMNHILTVLRTPAERASGFIALGEMAGALDGELKHYLPTITNHLRDAIAPRRGRPSLEALACVGSIAKAMGPAMESHVRGLLDVMFSAGLSPTLVESLEQITISIPSLLPSIQERLLDSISMVLSKSHSPQGRPAAVVGRGNVMTVPQPVSDLCGSSLVQLALQTLARFNFKGHDLLEFARESVVVYLDDEDGATRKDAALCCCRLVANSFSVMTCTQFGTSRSSRAGGRRRRLVEELVEKLLIAAVADADVAVRNSIFVSLHGNRGFDDFIAQADSLSAVFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLDQSADNKCREESAKLLGCLIRNCERLILPYIAPVHKALVARLSEGTGVNANNGIITGVLVTVGDLARVGGFAMRQYLPELMPLIVEALLDGAAVAKREVAVSTLGQVVQSTGYVITPYNEYPLLLGLLLKLLNGELAWSTRREVLKVLGIMGALDPHVHKRNQASLPGSHGEVTRAASDSGQHIQSVDELPMELWPSFATSEDYYSTVAINSLLRILRDPSLASYHLKVVGSLMFIFKSMGLGSVPYLPKVLPDLFHTVSTCDDTLKDFITWKLGTLVSIVRQHIRKYLPELLSLISELWSSFNFPSTSRPPLGYPVLHLVEQLCLALNDEFRMILHIILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPTDIRCAAIRTLTRLIPRVQVTGHISSLVHHLKLVLDGRNDELQKDAVDALCCLAQALGEDFTVFIPSIHKLLLKHRLRHKEFEEIEGRLRRREPLILGSTTAQRLSRRVPVEVISDPLNDKDIDPYEDRSDVHKQFRGHQVNDGRLRTAGEASQRSTKEDWAEWMRHFSIELLKESPSPALRTCARLAQLQPFVGRELFAAGFVSCWAQLNEISQKQLVRSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSKKMDANPVAVVEALIHINNQLHQHEAAVGILTYAQQHLGVQLKESWYEKLQRWEDALKAYTAKASQASNPHLVLDAMLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRSLGNTAASGDGSSSGTFYRAVLLVRKGKYDEAREYVDRARKCLATELAALVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNSVAEGRRALIRNMWTERIQGAKRNVEVWQAVLAVRALVLPPTEDIETWLKFASLCRKSGRVSQARSTLVKLLQYDPETSENGWYSGPPQVMLAYLKYQWSLGEDIKRKEAFARLQVLSRELSSSPIVQPVKPVSMSSGRSSTVPLLARVCLELGTWQWALSPGLDDDSIQEILTAFRNATQCANTWAKAWHMWALFNTAVMSHYTMRGFPDVAAQFVVAAVTGYFHSIACAANSKGVDDSLQDILRLLTLWFNHGATADVQMALQKGFAHVNINTWLVVLPQIIARIHSNNHAVRELIQSLLVRIGQSHPQSLIQEALELARPKTPTQQKSKHIPGALTSNFVGVISLAIVPMSVDIELFLLLMFEE 1921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8190413 8235974 - CcPI632755_02g007720.1 Cco02g0772 171529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0772 1921 Pfam Serine/threonine-protein kinase mTOR domain 760 928 IPR024585 -
Cco02g0772 1921 Coils Coil 1368 1388 - -
Cco02g0772 1921 FunFam Serine/threonine-protein kinase TOR 637 813 - -
Cco02g0772 1921 Gene3D Tetratricopeptide repeat domain 1197 1753 IPR011990 GO:0005515(InterPro)
Cco02g0772 1921 SUPERFAMILY ARM repeat 44 527 IPR016024 -
Cco02g0772 1921 FunFam Serine/threonine-protein kinase TOR 35 232 - -
Cco02g0772 1921 Gene3D - 693 804 IPR011989 -
Cco02g0772 1921 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 24 1871 IPR050517 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016242(PANTHER)|GO:0031929(PANTHER)|GO:0031931(PANTHER)|GO:0031932(PANTHER)
Cco02g0772 1921 Gene3D - 239 457 IPR011989 -
Cco02g0772 1921 Gene3D - 1009 1125 IPR011989 -
Cco02g0772 1921 Gene3D - 838 1008 IPR011989 -
Cco02g0772 1921 MobiDBLite consensus disorder prediction 1 20 - -
Cco02g0772 1921 SUPERFAMILY TPR-like 1372 1632 IPR011990 GO:0005515(InterPro)
Cco02g0772 1921 FunFam Serine/threonine-protein kinase TOR 246 459 - -
Cco02g0772 1921 Pfam FAT domain 1438 1803 IPR003151 GO:0005515(InterPro)
Cco02g0772 1921 ProSiteProfiles FAT domain profile. 1298 1877 IPR014009 -
Cco02g0772 1921 Gene3D - 35 232 IPR011989 -
Cco02g0772 1921 Gene3D - 540 692 IPR011989 -
Cco02g0772 1921 SMART DUF3385_3 760 928 IPR024585 -
Cco02g0772 1921 FunFam Serine/threonine-protein kinase TOR 839 1007 - -
Cco02g0772 1921 SUPERFAMILY ARM repeat 333 1421 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0772 K07203 - - csv:101212051 3532.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g774 . . . . . Bpe12g00734 . . Cmo19g00552 . . . . . . . Cpe15g00427 Bhi05g01001 . . . . . . Cla02g00700 Cam02g0733 Cec02g0747 Cco02g0772 Clacu02g0744 Cmu02g0739 Cre02g1052 Cone12ag1029 . . . Lsi03g00601 Csa07g00668 . Cme01g00136 . Blo13g00276 Bda15g00469 . . . . Bma08g00017 . . . . Cma19g00538 . Car19g00395 . . . . . . . . . . . . . . . . . . Chy01g00147 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006863 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 1 1 1 1 36