Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0776 ATGGATCTTCTCAAGCTCTCCTTCATTCTATTTTGTGTCTTGAGTTTCTCTATGCTTCCTTCTTCTCTCGCTCAAGACTCGCCTCAAGACTTCCTCAATGCCCATAACGCTGCTCGTGCCCAAGTTGGTGTCAGACCTCTCAAATGGGACGAGAAGGTGGCAAATTATTCCAAACAATATGCCAACCAACGCAAGGGCGACTGTAAGTTGATACATTCAAATGGGCCTTACGGAGAGAATCTTGCATGGGGTAGCCCTGACTTGACAGGCATCAATGGAGTCAAGCTTTGGGTGGATGAGAAGCAATACTACAAGTACGACACCAATTCATGTGTCTCTGGAAAGGTGTGTGGGCATTATACTCAAGTGGTTTGGAAGAACTCAGCTAGACTTGGATGCGCAAAAGTGAAGTGCATAAATAACGGTGGTGCGTTCATCATTTGCAACTATGACCCTAGTGGCAATATTATTGGTCAGAAGCCATATTGA 489 45.19 MDLLKLSFILFCVLSFSMLPSSLAQDSPQDFLNAHNAARAQVGVRPLKWDEKVANYSKQYANQRKGDCKLIHSNGPYGENLAWGSPDLTGINGVKLWVDEKQYYKYDTNSCVSGKVCGHYTQVVWKNSARLGCAKVKCINNGGAFIICNYDPSGNIIGQKPY 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8325596 8326084 - CcPI632755_02g007760.1 Cco02g0776 171533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0776 162 Gene3D CAP 26 162 IPR035940 -
Cco02g0776 162 FunFam Putative pathogenesis-related protein 1 25 162 - -
Cco02g0776 162 SMART SCP_3 26 158 IPR014044 -
Cco02g0776 162 SUPERFAMILY PR-1-like 8 162 IPR035940 -
Cco02g0776 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576(InterPro)
Cco02g0776 162 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Cco02g0776 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cco02g0776 162 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cco02g0776 162 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cco02g0776 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 158 IPR001283 GO:0005615(PANTHER)
Cco02g0776 162 Pfam Cysteine-rich secretory protein family 32 150 IPR014044 -
Cco02g0776 162 CDD CAP_PR-1 28 162 - -
Cco02g0776 162 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0776 K13449 - - csv:101213016 290.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0776 Cco-Chr2:8325596 Cco03g1344 Cco-Chr3:26944147 6.40E-62 dispersed
Cco02g0776 Cco-Chr2:8325596 Cco02g0777 Cco-Chr2:8349732 3.60E-73 tandem
Cco02g1391 Cco-Chr2:26144924 Cco02g0776 Cco-Chr2:8325596 1.20E-26 transposed
Cco10g0966 Cco-Chr10:20983360 Cco02g0776 Cco-Chr2:8325596 4.60E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127