Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0778 ATGGGATTTGCCGACATCCCCTCGAACCTTTGCTGGTTGGAGCTAACCCTAACCCTAGCTTCGTCCATTGCCCCTGCAGTGGCCAATGACTACCCTAAGAACTACCTTGCTGCCCACAATGCAATCCGTGCTGAGGTTGGCGTTGAGCCCCTCCATTGGAACGCCACGTTGGCTGCATATGCTCAAAATTACCCAAGCACGAAGATCGCCACTTGTGAAATGAAGCACTCTGGAGGACCCTATGGCGAAAACCTAGCAGAGGGATATGAAGTGATGACAGCAGAGACGGCGGTGAGTTTGTGGGCCGACGAGAAAAAGCATTACGACTATAACTCTAACACGTGTGTCAACGACTCTAGCCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGTGGCCAATGACTACCCTAAGAACTACCTTGCTGCCCACAATGCAATCCGTGCTGAGGTTGGCGTTAAGCCCCTCCATTGGAACGCCACGTTGGCTGCATATGCTCAAAATTACGCTAGCACGAAGATCGCCACTTGTGAAATGAAGCACTCTGGAGGACCCTATGGCGAAAACCTAGCAGAGGGATATGAAGTGATGACAGCAGAGACAGCAGTGAGTTTGTGGGCTGACGAGAAAAAGTATTACGACTATAATTCTAACACGTGTGTCAACGACTCTAGCCATTGCCTCCATTATACACAGTTGGTGTGGAGGAACACCAAATCTGTTGGTTGCGCCCAAGTGAAATGCCAAAACAATTGGGTTTTTCTGACCTGCAGCTACTATCCTCCAAGCAACTATGTAGGCCAACGTCCTTACTAA 831 49.34 MGFADIPSNLCWLELTLTLASSIAPAVANDYPKNYLAAHNAIRAEVGVEPLHWNATLAAYAQNYPSTKIATCEMKHSGGPYGENLAEGYEVMTAETAVSLWADEKKHYDYNSNTCVNDSSHCLHYTQLVWRNTKSVVANDYPKNYLAAHNAIRAEVGVKPLHWNATLAAYAQNYASTKIATCEMKHSGGPYGENLAEGYEVMTAETAVSLWADEKKYYDYNSNTCVNDSSHCLHYTQLVWRNTKSVGCAQVKCQNNWVFLTCSYYPPSNYVGQRPY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8379587 8383315 + CcPI632755_02g007780.1 Cco02g0778 171535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0778 276 FunFam Putative pathogenesis-related protein 1 139 276 - -
Cco02g0778 276 Gene3D CAP 140 276 IPR035940 -
Cco02g0778 276 Gene3D CAP 30 138 IPR035940 -
Cco02g0778 276 PRINTS Allergen V5/Tpx-1 family signature 207 220 IPR001283 -
Cco02g0778 276 PRINTS Allergen V5/Tpx-1 family signature 232 248 IPR001283 -
Cco02g0778 276 PRINTS Allergen V5/Tpx-1 family signature 259 272 IPR001283 -
Cco02g0778 276 PRINTS Allergen V5/Tpx-1 family signature 161 179 IPR001283 -
Cco02g0778 276 SUPERFAMILY PR-1-like 139 276 IPR035940 -
Cco02g0778 276 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 33 136 IPR001283 GO:0005615(PANTHER)
Cco02g0778 276 SMART SCP_3 140 272 IPR014044 -
Cco02g0778 276 SMART SCP_3 30 139 IPR014044 -
Cco02g0778 276 SUPERFAMILY PR-1-like 29 135 IPR035940 -
Cco02g0778 276 CDD CAP_PR-1 142 276 - -
Cco02g0778 276 Pfam Cysteine-rich secretory protein family 146 264 IPR014044 -
Cco02g0778 276 Pfam Cysteine-rich secretory protein family 36 136 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0778 K13449 - - csv:101210987 261.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0778 Cco-Chr2:8379587 Cco02g0786 Cco-Chr2:8503922 2.30E-75 dispersed
Cco02g0777 Cco-Chr2:8349732 Cco02g0778 Cco-Chr2:8379587 2.40E-40 tandem
Cco02g0778 Cco-Chr2:8379587 Cco02g0779 Cco-Chr2:8395850 3.10E-40 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63