Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0780 ATGGCCAAAAGTTATCCTAAGAACTACATTGCTGCCCACAATGTCATCCGTTCAGAGGTTGGTGTTGAGCCCCTCCATTGGAATACCACCTTGGCAGCTTATGCTCAAAATTACGCTAACACAAAGATCACCACTTGTCAAATGGAGCACTCTGGAGGACCTTATGGCGAAAACTTAGCAGAGGGATATGAAGTGATGACAGCAGAGACGGCAGTGAGTCTTTGGGCTAATGAGAAGAAACATTATGACTACAATTCTAACACTTGTGCTAACGACTCTAGCCATTGCCTCCATTATACACAGTTAGTGTGGAGAAACACCAAATCTGTTGGTTGTGCCCAAGTGAAGTGTCAAAACAATTGGGTTTTTCTGATTTGCAACTATTATCCTCGAGGAAACTATATAGGCCAACGTCCATATTAA 423 42.79 MAKSYPKNYIAAHNVIRSEVGVEPLHWNTTLAAYAQNYANTKITTCQMEHSGGPYGENLAEGYEVMTAETAVSLWANEKKHYDYNSNTCANDSSHCLHYTQLVWRNTKSVGCAQVKCQNNWVFLICNYYPRGNYIGQRPY 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8410083 8410505 - CcPI632755_02g007800.1 Cco02g0780 171537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0780 140 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 8 136 IPR001283 GO:0005615(PANTHER)
Cco02g0780 140 SMART SCP_3 4 136 IPR014044 -
Cco02g0780 140 FunFam Putative pathogenesis-related protein 1 3 140 - -
Cco02g0780 140 Pfam Cysteine-rich secretory protein family 11 128 IPR014044 -
Cco02g0780 140 ProSitePatterns CRISP family signature 2. 123 134 IPR018244 GO:0005576(InterPro)
Cco02g0780 140 Gene3D CAP 5 140 IPR035940 -
Cco02g0780 140 CDD CAP_PR-1 6 140 - -
Cco02g0780 140 PRINTS Allergen V5/Tpx-1 family signature 25 43 IPR001283 -
Cco02g0780 140 PRINTS Allergen V5/Tpx-1 family signature 71 84 IPR001283 -
Cco02g0780 140 PRINTS Allergen V5/Tpx-1 family signature 96 112 IPR001283 -
Cco02g0780 140 PRINTS Allergen V5/Tpx-1 family signature 123 136 IPR001283 -
Cco02g0780 140 SUPERFAMILY PR-1-like 3 140 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0780 K13449 - - csv:101210987 268.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0780 Cco-Chr2:8410083 Cco02g0786 Cco-Chr2:8503922 7.20E-78 dispersed
Cco02g0779 Cco-Chr2:8395850 Cco02g0780 Cco-Chr2:8410083 2.90E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63