Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0799 ATGACTAATTCACCATTTCCCGCCGGAAAACCCTCCCGCCGCCGCCCTCCTCCGGTGGCTCTCCTCCTCCTCCTCCTCCTCCTCCTCTGTTCACTTTCCCTCTCCCATGGTGATGAACTTCACCCACTTTTAGACCTCAAATCTGCCCTCTCCAACAACTCAACCTTCTCCTCTTCTTTGGTTTTCAACTCTTGGATTAAAGGAAATGACGTTTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGCTTTGTAGTGGAAATCAATCTCTCTGCTCACAACTTATCTGGGATTCTTCCTTTTGATTCCATTTGCTCTTTGCAATCTCTTGAGAAGTTGTCTTTTGGGTCTAATTTTTTGTATGGGAAGGTCAGTGATGGTTTGAGAAACTGTTCCAAGTTGAAGTATTTGGATTTGGGTCAGAATGTGTTTTCTGGTGAAGTACCTGATTTGTCTTCTTTAGTGGGATTGAGATTCTTGAGCTTGAATAACAGTGGGTTTTCTGGAGATTTTCCTTGGAAATCTCTTCTTAATCTTACTGATTTGGAGTTCTTAAGCCTTGGAGACAATATATTTAACCCAACAACTTCATTCCCATCAGAAATTCTCGACCTTAAGAACCTTCGTTGGCTTTACCTCTCTAACTGCACAATTCATGGAGAAATCCCATCAAGGATCGGGAACCTGTCTTTGCTTGAGAATCTTGAGCTCTCACAAAATAAACTCACAGGTGAAATTCCTTCTGAGATTGTGAACCTGAAGAAGCTATGGCAACTGGAGTTACATGAGAATTCCTTGACCGGGAAGCTTCCGGTCGGGTTCGGTAACCTCACTGGACTGAGGAAGTTTGATGCCTCATCTAATAATCTTGTAGGTGATTTGATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAATCAATTTTCCGGTACGATTCCGGAGGAGTTTGGGGACTTTAGGGACCTTGTTGAACTCTCTCTTTACCAAAACAAGCTCACTGGCAACCTCCCTCAAAGAATTGGATCTTGGGCTGCCTTCATTTTCATTGATGTTTCGGAGAATTTCTTGTCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAATATGACTGATCTCTTGATGTTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACATGAACTGTACATCTTTGAATCGATTTCGTGTAAACAATAACTCTCTTTCGGGTGTTGTTCCTGCTGGGATTTGGAGTCTGCCAAATCTTACTATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCGGATATCAGTAAAGCAAATGCTCTTGCTCAGTTGTTCTTATCGAATAACCGGTTTTCTGGAAACTTACCGCCTGAGCTTGGTGATGTATCATCCTTAGTCTCAATCAAGCTCGATTCGAACCAATTTGTTGGTCAAATACCCGAATCACTTGGCAAGTTGAAGGACTTGAGCAGCCTTTCTTTGAACAACAACAAATTTTCCGAAAACATACCTAACTCATTAGGCTCTTGCAATTCTCTTTCTACCATAGATCTATCTATGAACTCATTCTCCGGGTATATTCCGGAGAATCTTGGTTACTTGCCGATTCTAAACTCCTTGAATCTGTCTAACAATAAACTTTCAGGTGAAATTCCAACTAGTTTTTCGCAGTTGAAGCTAAGCAGTTTGGACCTGTCTAATAACAGGTTAATTGGCCAAGTACCTGAATCACTCGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGCAGTGACTCTCTCGGATACTTGAGTTCATGTTCACCAACCTCTAGATCATCCAGCCATCTCAGCTCGTTGCTGTCATGTACCATTGCTGGAATCCTAGTGTTGCTCATGTCCTTCTCGTTCTTGTTGTTTGTTAAATGGAAACGTAACAAGGATGCTAAGCATTTACTGATATCCAAATCGTGGGATATGAAGCCGTTCCGAATAGTGTGCTTCACGGAAAAGGAAATCATTGATTCAATCAATTCTCACAACTTGATAGGAAGAGGAGGATCTGGAAATGTTTACAAAGTCGTACTAAGTAATGGCAAAGAACTCGCCGTGAAACATATATGGCAGTCAAGCTCCAGGGACCAAGCAAATTGTCGGACCAGTGCAACCATGTTAACTAAAAGAAAGACCAGGTCATCTGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAATGTGGTGAAATTATACTGCAGCATTTCGAGCGAGGATAGTAACCTGTTGGTCTACGAGTACTTACCAAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTAGCGGTTGGAGCAGCAAGGGGACTCGAGTATTTACATCATGGGTGTGACCGACCTGTTATTCACCGAGATGTGAAGTCGAGTAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTTGGGCTAGCTAAGATTCTGCAGGATGGCTATGGGGTTGGAGATTCATCTCATGTCATTGCTGGAACACTCGGTTATATAGCCCCTGAATATGCATACACATGCAAGATAAACGAGAAGAGTGACGTTTACAGCTTCGGAGTTGTCCTAATGGAACTAGTAACAGGAAAGCAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGATAGACCTAAAAGGTAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAAGTGGAGGATGCAGTCAAAGTGCTAAGAATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCGATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAGCCTTATAACTTTATTGACATTGTGGTCAAGAAAGAATGTAAAAAGTAA 2967 42.67 MTNSPFPAGKPSRRRPPPVALLLLLLLLLCSLSLSHGDELHPLLDLKSALSNNSTFSSSLVFNSWIKGNDVCSSFHGIVCDSNGFVVEINLSAHNLSGILPFDSICSLQSLEKLSFGSNFLYGKVSDGLRNCSKLKYLDLGQNVFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWKSLLNLTDLEFLSLGDNIFNPTTSFPSEILDLKNLRWLYLSNCTIHGEIPSRIGNLSLLENLELSQNKLTGEIPSEIVNLKKLWQLELHENSLTGKLPVGFGNLTGLRKFDASSNNLVGDLMELRFLTNLESLQLFENQFSGTIPEEFGDFRDLVELSLYQNKLTGNLPQRIGSWAAFIFIDVSENFLSGPIPPDMCKQGNMTDLLMLQNNFIGGIPESYMNCTSLNRFRVNNNSLSGVVPAGIWSLPNLTIIDLSMNQFEGPVTSDISKANALAQLFLSNNRFSGNLPPELGDVSSLVSIKLDSNQFVGQIPESLGKLKDLSSLSLNNNKFSENIPNSLGSCNSLSTIDLSMNSFSGYIPENLGYLPILNSLNLSNNKLSGEIPTSFSQLKLSSLDLSNNRLIGQVPESLAIQAFDESFMGNPGLCSDSLGYLSSCSPTSRSSSHLSSLLSCTIAGILVLLMSFSFLLFVKWKRNKDAKHLLISKSWDMKPFRIVCFTEKEIIDSINSHNLIGRGGSGNVYKVVLSNGKELAVKHIWQSSSRDQANCRTSATMLTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGYGVGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKQPNEPEFGENKDIVQWAHSRMIDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNFIDIVVKKECKK 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8793933 8797014 - CcPI632755_02g007990.1 Cco02g0799 171556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0799 988 Gene3D Transferase(Phosphotransferase) domain 1 774 982 - -
Cco02g0799 988 SMART serkin_6 681 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0799 988 SUPERFAMILY L domain-like 198 437 - -
Cco02g0799 988 SMART LRR_typ_2 254 277 IPR003591 -
Cco02g0799 988 SMART LRR_typ_2 493 517 IPR003591 -
Cco02g0799 988 SMART LRR_typ_2 421 450 IPR003591 -
Cco02g0799 988 SMART LRR_typ_2 301 324 IPR003591 -
Cco02g0799 988 SMART LRR_typ_2 206 230 IPR003591 -
Cco02g0799 988 SMART LRR_typ_2 541 565 IPR003591 -
Cco02g0799 988 ProSitePatterns Protein kinases ATP-binding region signature. 687 709 IPR017441 GO:0005524(InterPro)
Cco02g0799 988 FunFam Leucine-rich repeat receptor-like protein kinase 774 984 - -
Cco02g0799 988 Gene3D Ribonuclease Inhibitor 197 351 IPR032675 -
Cco02g0799 988 FunFam Receptor-like protein kinase 7 125 375 - -
Cco02g0799 988 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Cco02g0799 988 Pfam Leucine Rich Repeat 566 585 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 233 254 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 303 324 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 496 517 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 519 541 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 448 467 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Pfam Leucine Rich Repeat 544 565 IPR001611 GO:0005515(InterPro)
Cco02g0799 988 Gene3D Ribonuclease Inhibitor 353 619 IPR032675 -
Cco02g0799 988 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 972 IPR050647 -
Cco02g0799 988 FunFam Inactive leucine-rich repeat receptor-like protein kinase 391 487 - -
Cco02g0799 988 Gene3D Ribonuclease Inhibitor 38 196 IPR032675 -
Cco02g0799 988 SUPERFAMILY L domain-like 379 596 - -
Cco02g0799 988 Pfam Protein kinase domain 683 967 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0799 988 Gene3D Phosphorylase Kinase; domain 1 665 773 - -
Cco02g0799 988 FunFam Receptor-like protein kinase HAIKU2 664 773 - -
Cco02g0799 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g0799 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 488 609 - -
Cco02g0799 988 ProSiteProfiles Protein kinase domain profile. 681 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0799 988 SUPERFAMILY L domain-like 56 209 - -
Cco02g0799 988 SUPERFAMILY Protein kinase-like (PK-like) 660 970 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0799 Cco-Chr2:8793933 Cco11g1543 Cco-Chr11:28333246 6.00E-86 dispersed
Cco07g1270 Cco-Chr7:26710548 Cco02g0799 Cco-Chr2:8793933 2.70E-38 dispersed
Cco02g0799 Cco-Chr2:8793933 Cco11g1542 Cco-Chr11:28315101 5.50E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86561 PF00069 Pkinase 5.80E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0799 - - - 0.0