Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0802 | ATGGATAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGTGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCTAAACTCACAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTAGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGACGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCCCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA | 1005 | 42.79 | MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLLNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVLVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8853929 | 8855561 | - | CcPI632755_02g008020.1 | Cco02g0802 | 171559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0802 | 334 | Coils | Coil | 200 | 227 | - | - | |
Cco02g0802 | 334 | Gene3D | - | 160 | 233 | IPR036638 | GO:0046983(InterPro) | |
Cco02g0802 | 334 | MobiDBLite | consensus disorder prediction | 144 | 163 | - | - | |
Cco02g0802 | 334 | SMART | finulus | 167 | 216 | IPR011598 | GO:0046983(InterPro) | |
Cco02g0802 | 334 | PANTHER | BHLH TRANSCRIPTION FACTOR | 11 | 332 | IPR052610 | - | |
Cco02g0802 | 334 | MobiDBLite | consensus disorder prediction | 144 | 165 | - | - | |
Cco02g0802 | 334 | CDD | bHLH_AtNAI1_like | 163 | 235 | - | - | |
Cco02g0802 | 334 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 224 | IPR036638 | GO:0046983(InterPro) | |
Cco02g0802 | 334 | Pfam | Helix-loop-helix DNA-binding domain | 165 | 211 | IPR011598 | GO:0046983(InterPro) | |
Cco02g0802 | 334 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 161 | 210 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0802 | Cco-Chr2:8853929 | Cco04g1563 | Cco-Chr4:30996295 | 3.10E-42 | dispersed | |
Cco02g0802 | Cco-Chr2:8853929 | Cco04g1564 | Cco-Chr4:31016318 | 4.40E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58737 | PF00010 | HLH | 2.40E-10 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0802 | - | - | - | 0.0 |