Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0802 ATGGATAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGGTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAAACAAACATCGACCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATGTGAAACAGCTCAAAAGTGATGGGTGGAGTTCATACCAGACAACTAATCATTTGCTAAACTCACAAGTTATTGCGTATCCGACCGCATCTGTTTCAGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTACGAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGTCAGCGGTTTATCGCTTTATCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTCCAAGAGAAAGTGAAGATACTTGAGGAACAAACCCGGAGGAAAGACATCGAATCTGTTGTATTAGTCAAGAAATCCCAAGTTTTTGCTGATGGAAACAACACATCAAAAGAGGAGGACGAGCCCCTTCCCGAGATTGAAGCAAGATTTTGTGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCCCTCGACATAACTATTATTGCGCAGATGGATAATGAATTCTGTCTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCGACTTTGCGCTCGTTTTAA 1005 42.79 MDKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNAILGYVKQLKSDGWSSYQTTNHLLNSQVIAYPTASVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPSTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVLVKKSQVFADGNNTSKEEDEPLPEIEARFCDKNVLIRIHCEKKKDVLEKTIAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRSF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8853929 8855561 - CcPI632755_02g008020.1 Cco02g0802 171559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0802 334 Coils Coil 200 227 - -
Cco02g0802 334 Gene3D - 160 233 IPR036638 GO:0046983(InterPro)
Cco02g0802 334 MobiDBLite consensus disorder prediction 144 163 - -
Cco02g0802 334 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Cco02g0802 334 PANTHER BHLH TRANSCRIPTION FACTOR 11 332 IPR052610 -
Cco02g0802 334 MobiDBLite consensus disorder prediction 144 165 - -
Cco02g0802 334 CDD bHLH_AtNAI1_like 163 235 - -
Cco02g0802 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983(InterPro)
Cco02g0802 334 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
Cco02g0802 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0802 Cco-Chr2:8853929 Cco04g1563 Cco-Chr4:30996295 3.10E-42 dispersed
Cco02g0802 Cco-Chr2:8853929 Cco04g1564 Cco-Chr4:31016318 4.40E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58737 PF00010 HLH 2.40E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0802 - - - 0.0