Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0805 ATGTATCTTCTTTGTCACTCTCTTTCAGAAACATTCCGTCAATTCCACTGCTTACTTCCTCTCGACCCTTCTTCTTCAGTCTTCCCTGCTATCTCACTTGTCCCTACCTTGGATTTGTCACCTGAAGTTTTACTTCCCATGGCTTCGTCTGAGATCGAGGTCGTAGCATCACCCAACTCAAAATCTCAGACAAACCCTGAAGTTGCCATCATGGACGTCTACTCTGCTTCTGCTTATGGAGATTTCCAGAAAGTGAGGAGTTTTGTTGAAGAGCATGGAGCTTCTCTTTCGGTTCCTGATTCCAACGGGTACTATGCCCTGCAATGGGCTGCTCTAAACAACTTCCCCGATATCGTCCAGTACATCATTGAGCATGGAGCAGATGTCAATTCCTGCGACAAATTGCAGCAGACAGCACTTCACTGGGCAGCAGTTCGGGGTTCAATTATGGCTGCAGACATCCTCCTGCTGAATGGAGCTCGAGTGGAGGCAGCTGATATACATGGGTATCGGGCAGCTCATATTGCTGCTCAATATGGACAAACTGCATTCTTGAATCACATTGTTGCCAAATTCCATGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGTTTTGCCGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGAAAGACAAGATAAAGAAGGTTGTACCCCTTTGCATTGGGCTGCAATAGGAGGAAATGTGGAGGCATGCACTGTTCTTGTGCATGCAGGAAGGAAGAAAGAATTGTTGATCAAAGACAATGCTGGTTATACACCTTTTCAACTGGCAACTGATAAAGGTCATCGGCAAATTGCTCATATCCTCTCTAAAGCACAACGGACGCATCGCAGCCACTTGGGAGCAAAATTTTGTACTTGGAAGATTGAAAGTTTTGGTTATGCCCCTATTTTACTGTGTGCCATCATTATTCTGGTGATCCTCTTCATCAATTCAGTTCTTGCAGGCTCTAATCTTCCGAAGGTTACTGCTGTTATTGGACTTTGGGCGTGGACTGCCCTCTGTTTGGCATTTGTTTCTCTGATAATGTTTTATAGGTGTAGTAGCAAAGATCCAGGCTATATAAAAAGACCGGGAGAGTTGGGCAATCCTACCAATACAGAGGATCCTTTGTTGAGCATTGATCTCAATAGTTCTTCAGTATGGGTGGGGAATTGGTCTCAACTATGCCCCACATGCAAGATAATTAGACCTGTTCGTTCGAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAGTTTGACCACCACTGCCCATGGATATCTAATTGTGTGGGGAAGAGGAATAAACGGGATTTTTTTGTTTTCATCTGCTTGGGAACTTTGACATCATTCCTTTCTGGCTATATTTCCATACTAAGAATCTACACTGTGCCTTCAGCATTGCCAACTGGAGAAACTTGGTTTCATCATGCGGTAGTTCATTATCCTGGAGTCGTTACATTTCTTTTTCTGGATGCTGTTATATTTATTGCTGCCACAACTTTGACTGTAGCTCAGGCATCTCAGATAGCACGAAATATCACCACGAATGAACTGTCAAATGCCATTCGCTATGGATATCTTCGTGGTCCAGATGGGAAATTTCGGAATCCATATAATCATGGATGTCGAAAGAATTGCTCTGATTTCCTCATTCAAGGCTATACAGACGACGAGATTGCTTGGCCTCCATTACAGCGTGCTGCCAGTTAA 1758 43.86 MYLLCHSLSETFRQFHCLLPLDPSSSVFPAISLVPTLDLSPEVLLPMASSEIEVVASPNSKSQTNPEVAIMDVYSASAYGDFQKVRSFVEEHGASLSVPDSNGYYALQWAALNNFPDIVQYIIEHGADVNSCDKLQQTALHWAAVRGSIMAADILLLNGARVEAADIHGYRAAHIAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQERQDKEGCTPLHWAAIGGNVEACTVLVHAGRKKELLIKDNAGYTPFQLATDKGHRQIAHILSKAQRTHRSHLGAKFCTWKIESFGYAPILLCAIIILVILFINSVLAGSNLPKVTAVIGLWAWTALCLAFVSLIMFYRCSSKDPGYIKRPGELGNPTNTEDPLLSIDLNSSSVWVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFICLGTLTSFLSGYISILRIYTVPSALPTGETWFHHAVVHYPGVVTFLFLDAVIFIAATTLTVAQASQIARNITTNELSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIQGYTDDEIAWPPLQRAAS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8927442 8937124 - CcPI632755_02g008050.1 Cco02g0805 171562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0805 585 SUPERFAMILY Ankyrin repeat 74 292 IPR036770 -
Cco02g0805 585 Gene3D - 63 166 IPR036770 -
Cco02g0805 585 SMART ANK_2a 202 231 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 SMART ANK_2a 270 299 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 SMART ANK_2a 102 131 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 SMART ANK_2a 235 264 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 SMART ANK_2a 168 198 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 SMART ANK_2a 135 164 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 69 574 - GO:0000139(PANTHER)|GO:0016409(PANTHER)|GO:0018345(PANTHER)
Cco02g0805 585 Gene3D - 167 322 IPR036770 -
Cco02g0805 585 ProSiteProfiles DHHC domain profile. 409 459 - -
Cco02g0805 585 ProSiteProfiles Ankyrin repeat region circular profile. 202 234 - -
Cco02g0805 585 ProSiteProfiles Ankyrin repeat profile. 202 234 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 ProSiteProfiles Ankyrin repeat region circular profile. 135 166 - -
Cco02g0805 585 ProSiteProfiles Ankyrin repeat profile. 135 167 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 ProSiteProfiles Ankyrin repeat profile. 235 259 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 Pfam Ankyrin repeats (3 copies) 174 261 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 Pfam Ankyrin repeats (3 copies) 76 165 IPR002110 GO:0005515(InterPro)
Cco02g0805 585 FunFam S-acyltransferase 189 297 - -
Cco02g0805 585 ProSiteProfiles Ankyrin repeat region circular profile. 102 134 - -
Cco02g0805 585 FunFam S-acyltransferase 58 188 - -
Cco02g0805 585 ProSiteProfiles Ankyrin repeat region circular profile. 235 259 - -
Cco02g0805 585 Pfam DHHC palmitoyltransferase 409 536 IPR001594 GO:0016409(InterPro)
Cco02g0805 585 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0805 K20032 - - csv:101206919 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0805 Cco-Chr2:8927442 Cco11g0365 Cco-Chr11:3685632 1.90E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37