Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0808 | ATGGACACTCTCTTTGTCCCCATATCCTTCTCCGAACCTCCTCGTCCTTCACTCACCCGCAACACCAACGCCGGTGCTCAATCGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAAGCGCTTTCCCATTCCCTGTAAGAAGCTTTCCTCTCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGAGGCCTCCAGTCACCGACACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCAGTAGTGACGGTGATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTTTTTGAGGGAGCATCTACATTTGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCAGCTGCGTGCCCTTATTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCAGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCAGCCTTTGCATCAATTTTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCACATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACGATCACTGTTGAGCACTTGACAGGAGAAGTTAAACCATTGCAGATTAAGGTTGGGGAACGAGTTCCAGGTGGAGCAAGAAACCTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCTGTAGCGGTTGCACTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGCACACCAGGTTTCAGAGGATCGATTTATAGAGCACTTGGACTCATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCTTTGGCATATGCTATCGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTCCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACGGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGGGATAAATCACATTTTGCTTCCTGTTGCATACCTAGCTGCGAAAAAGAAGCCCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATAAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGACGCAGTTAGAGCATCATCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTAATTCACCTTGAGGATCAACCACGACCTGGAGTCTTAGATGCCATAGCAGAACTACAAGAACAGGGAAAACTCCGAGTTATGATGCTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTAGGCATAAATGAAGTGTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCTGCTACTGTGGGAATAGTTCTTGCCCATCGTGCAAGCGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGCATTCCATTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTTTGCCTGAACTCCCATAAACTTCTCTCTCCTAGGCAGGCATTTTCGAGTGTTTCGATGCACGTGTTTTGTTCATATTCCTGCGCGCACGTGTTTTGTTCATATTCCTGTGCTGTTAAGAGAAAAATTGTCCCCAAGGCCTCCGCTTATTTCTTTCTTGGATATGCTCAGTTCGGGTATAGATGCTATGCCGTGAAATCCAAGAGATGA | 2538 | 46.49 | MDTLFVPISFSEPPRPSLTRNTNAGAQSRIGPVSRFSPRSSLIRLKRFPIPCKKLSSPRFGHFRCAAEASSHRHGHHHGHHHHHHGCQHHCSSDGDGVELTGAQKAFVRFAEAIRWTDLANFLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSIYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQEQGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGIPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSHKLLSPRQAFSSVSMHVFCSYSCAHVFCSYSCAVKRKIVPKASAYFFLGYAQFGYRCYAVKSKR | 845 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9012068 | 9023846 | + | CcPI632755_02g008080.1 | Cco02g0808 | 171565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0808 | 845 | SUPERFAMILY | Calcium ATPase, transduction domain A | 260 | 345 | IPR008250 | - | |
Cco02g0808 | 845 | Gene3D | - | 463 | 612 | IPR023299 | GO:0000166(InterPro) | |
Cco02g0808 | 845 | Gene3D | - | 225 | 350 | - | - | |
Cco02g0808 | 845 | PRINTS | P-type cation-transporting ATPase superfamily signature | 705 | 717 | - | - | |
Cco02g0808 | 845 | PRINTS | P-type cation-transporting ATPase superfamily signature | 627 | 637 | - | - | |
Cco02g0808 | 845 | PRINTS | P-type cation-transporting ATPase superfamily signature | 604 | 615 | - | - | |
Cco02g0808 | 845 | PRINTS | P-type cation-transporting ATPase superfamily signature | 681 | 700 | - | - | |
Cco02g0808 | 845 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
Cco02g0808 | 845 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 188 | 766 | IPR023298 | - | |
Cco02g0808 | 845 | SFLD | C1.7: P-type atpase like | 434 | 734 | - | - | |
Cco02g0808 | 845 | SFLD | p-type atpase | 434 | 734 | IPR044492 | - | |
Cco02g0808 | 845 | Pfam | haloacid dehalogenase-like hydrolase | 450 | 694 | - | - | |
Cco02g0808 | 845 | SUPERFAMILY | HAD-like | 450 | 781 | IPR036412 | - | |
Cco02g0808 | 845 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
Cco02g0808 | 845 | Pfam | E1-E2 ATPase | 259 | 432 | - | - | |
Cco02g0808 | 845 | Gene3D | - | 445 | 732 | IPR023214 | - | |
Cco02g0808 | 845 | MobiDBLite | consensus disorder prediction | 14 | 31 | - | - | |
Cco02g0808 | 845 | MobiDBLite | consensus disorder prediction | 11 | 31 | - | - | |
Cco02g0808 | 845 | NCBIfam | HAD-IC family P-type ATPase | 585 | 761 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cco02g0808 | 845 | NCBIfam | HAD-IC family P-type ATPase | 261 | 473 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Cco02g0808 | 845 | NCBIfam | heavy metal translocating P-type ATPase | 186 | 783 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Cco02g0808 | 845 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 62 | 789 | IPR051949 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0808 | Cco-Chr2:9012068 | Cco02g0871 | Cco-Chr2:10357040 | 4.0e-314 | dispersed | |
Cco02g0808 | Cco-Chr2:9012068 | Cco06g1551 | Cco-Chr6:26066522 | 4.70E-55 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0808 | K01534 | - | csv:101221102 | 1392.87 |