Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0808 ATGGACACTCTCTTTGTCCCCATATCCTTCTCCGAACCTCCTCGTCCTTCACTCACCCGCAACACCAACGCCGGTGCTCAATCGAGGATTGGACCTGTTTCCCGCTTCTCGCCGCGTTCTTCTCTAATTCGGCTCAAGCGCTTTCCCATTCCCTGTAAGAAGCTTTCCTCTCCTCGCTTCGGTCACTTCCGTTGCGCCGCCGAGGCCTCCAGTCACCGACACGGTCACCATCACGGCCATCATCACCACCACCATGGCTGCCAGCACCATTGCAGTAGTGACGGTGATGGAGTGGAGCTGACTGGGGCTCAGAAGGCGTTTGTTCGATTTGCCGAAGCTATTAGGTGGACGGACTTGGCGAATTTTTTGAGGGAGCATCTACATTTGTGTTGCGGTTCTGCTGCTTTGTTTGTGACTGCAGCTGCGTGCCCTTATTTGGTGCCAAAACCTGCTGTGAAGCCTCTACAGAATGTTTTCATTGCAGTTGCTTTCCCTTTAGTCGGGGTCTCTGCTTCTCTTGATGCTCTTACTGATATTAGTGGTGGGAAAGTAAACATCCATGTACTAATGGCTCTTGCAGCCTTTGCATCAATTTTTATGGGGAACCCCTTGGAAGGAGGACTACTTCTTGTGATGTTTAATATGGCTCACATTGCTGAAGAGTATTTCACAAAGCAATCAATGATTGATGTTAAAGAGTTGAAGGAAAGTCATCCAGATTTTGCTCTTGTTCTTGATGTGAATGATGATAACCTTCCCGATACTTCAGATCTGGAGCATAGAAGGGTGCCAGTGCGTGATGTTGAAGTGGGCTCATATATCTTGGTGGGAGCTGGTGAGTCTGTCCCTGTAGATTGTGAAGTTTATCAAGGCTGTGCTACGATCACTGTTGAGCACTTGACAGGAGAAGTTAAACCATTGCAGATTAAGGTTGGGGAACGAGTTCCAGGTGGAGCAAGAAACCTGGACGGTAGGATCATAGTGAAGGCTACAAAAACATGGGAAGAGTCAACACTTAGCAGGATTGTGCAGTTGACTGAAGAAGCACAACTTAATAAACCAAAGCTACAGAGGTGGCTCGATGAATTTGGTGAGAATTACAGCAAGGTTGTTGTAGTCTTATCTGTAGCGGTTGCACTCATTGGACCATTATTGTTCAAGTGGCCATTTATATGCACACCAGGTTTCAGAGGATCGATTTATAGAGCACTTGGACTCATGGTAGCCGCATCACCATGTGCACTGGCAGCAGCACCTTTGGCATATGCTATCGCAATAAGTTCCTGTGCAAGAAAGGGGATACTCCTGAAAGGTGGACACGTCCTTGATGCTATGGCTTCTTGTCACACTGTTGCATTTGATAAAACGGGAACATTGACTACAGGAGGACTTGTGTTTAAAGCCATAGAACCCATTTATGGGCATAAGATTGGAGGGGATAAATCACATTTTGCTTCCTGTTGCATACCTAGCTGCGAAAAAGAAGCCCTTGCAGTGGCAGCTGCCATGGAAAAGGGTACTACTCACCCAATTGGAAGAGCTGTAGTAGATCATAGTGTGGGGAAAGACCTTCCTTCTATTTCTGTTGAAAGTTTTGAATATTTCCCTGGAAGAGGTCTCATTGCAACTCTGCATGGCATAAAGTCAGGAATTGGAGGTAAATTGCGGAAAGCATCTCTTGGTTCTGTGGATTTCATCACTTCCTTCTGCAAATCCGAAAATGAATCAAGGAAGATCAAGGACGCAGTTAGAGCATCATCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCAGTTGATCAAAAGGTAACACTAATTCACCTTGAGGATCAACCACGACCTGGAGTCTTAGATGCCATAGCAGAACTACAAGAACAGGGAAAACTCCGAGTTATGATGCTAACAGGTGATCATGATTCAAGTGCATGGAAAGTTGCGAATGCTGTAGGCATAAATGAAGTGTACTACAGTCTTAAGCCAGAGGACAAACTTGCTCACGTGAAGGAAATTTCAAGGGAGATGGGGGGTGGTCTGATCATGGTAGGCGAAGGTATAAACGATGCACCTGCACTTGCTGCTGCTACTGTGGGAATAGTTCTTGCCCATCGTGCAAGCGCTACTGCTACAGCTGTTGCAGACGTCCTGCTTCTTCAGGACAGTATTTCCGGCATTCCATTCTGCATTGCCAAATCTCGTCAGACCACTTCACTGGTCAAGCAAAATGTGACCCTTGCCTTGTCATCTATCCTTCTAGCCTCTCTCCCATCCGTTTTGGGGTTTCTTCCCTTGTGGCTAACGGTCCTTCTACACGAGGGTGGCACTCTCCTGGTTTGCCTGAACTCCCATAAACTTCTCTCTCCTAGGCAGGCATTTTCGAGTGTTTCGATGCACGTGTTTTGTTCATATTCCTGCGCGCACGTGTTTTGTTCATATTCCTGTGCTGTTAAGAGAAAAATTGTCCCCAAGGCCTCCGCTTATTTCTTTCTTGGATATGCTCAGTTCGGGTATAGATGCTATGCCGTGAAATCCAAGAGATGA 2538 46.49 MDTLFVPISFSEPPRPSLTRNTNAGAQSRIGPVSRFSPRSSLIRLKRFPIPCKKLSSPRFGHFRCAAEASSHRHGHHHGHHHHHHGCQHHCSSDGDGVELTGAQKAFVRFAEAIRWTDLANFLREHLHLCCGSAALFVTAAACPYLVPKPAVKPLQNVFIAVAFPLVGVSASLDALTDISGGKVNIHVLMALAAFASIFMGNPLEGGLLLVMFNMAHIAEEYFTKQSMIDVKELKESHPDFALVLDVNDDNLPDTSDLEHRRVPVRDVEVGSYILVGAGESVPVDCEVYQGCATITVEHLTGEVKPLQIKVGERVPGGARNLDGRIIVKATKTWEESTLSRIVQLTEEAQLNKPKLQRWLDEFGENYSKVVVVLSVAVALIGPLLFKWPFICTPGFRGSIYRALGLMVAASPCALAAAPLAYAIAISSCARKGILLKGGHVLDAMASCHTVAFDKTGTLTTGGLVFKAIEPIYGHKIGGDKSHFASCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSVGKDLPSISVESFEYFPGRGLIATLHGIKSGIGGKLRKASLGSVDFITSFCKSENESRKIKDAVRASSYGSEFVHAALSVDQKVTLIHLEDQPRPGVLDAIAELQEQGKLRVMMLTGDHDSSAWKVANAVGINEVYYSLKPEDKLAHVKEISREMGGGLIMVGEGINDAPALAAATVGIVLAHRASATATAVADVLLLQDSISGIPFCIAKSRQTTSLVKQNVTLALSSILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSHKLLSPRQAFSSVSMHVFCSYSCAHVFCSYSCAVKRKIVPKASAYFFLGYAQFGYRCYAVKSKR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9012068 9023846 + CcPI632755_02g008080.1 Cco02g0808 171565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0808 845 SUPERFAMILY Calcium ATPase, transduction domain A 260 345 IPR008250 -
Cco02g0808 845 Gene3D - 463 612 IPR023299 GO:0000166(InterPro)
Cco02g0808 845 Gene3D - 225 350 - -
Cco02g0808 845 PRINTS P-type cation-transporting ATPase superfamily signature 705 717 - -
Cco02g0808 845 PRINTS P-type cation-transporting ATPase superfamily signature 627 637 - -
Cco02g0808 845 PRINTS P-type cation-transporting ATPase superfamily signature 604 615 - -
Cco02g0808 845 PRINTS P-type cation-transporting ATPase superfamily signature 681 700 - -
Cco02g0808 845 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Cco02g0808 845 SUPERFAMILY Calcium ATPase, transmembrane domain M 188 766 IPR023298 -
Cco02g0808 845 SFLD C1.7: P-type atpase like 434 734 - -
Cco02g0808 845 SFLD p-type atpase 434 734 IPR044492 -
Cco02g0808 845 Pfam haloacid dehalogenase-like hydrolase 450 694 - -
Cco02g0808 845 SUPERFAMILY HAD-like 450 781 IPR036412 -
Cco02g0808 845 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Cco02g0808 845 Pfam E1-E2 ATPase 259 432 - -
Cco02g0808 845 Gene3D - 445 732 IPR023214 -
Cco02g0808 845 MobiDBLite consensus disorder prediction 14 31 - -
Cco02g0808 845 MobiDBLite consensus disorder prediction 11 31 - -
Cco02g0808 845 NCBIfam HAD-IC family P-type ATPase 585 761 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g0808 845 NCBIfam HAD-IC family P-type ATPase 261 473 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g0808 845 NCBIfam heavy metal translocating P-type ATPase 186 783 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco02g0808 845 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 62 789 IPR051949 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0808 Cco-Chr2:9012068 Cco02g0871 Cco-Chr2:10357040 4.0e-314 dispersed
Cco02g0808 Cco-Chr2:9012068 Cco06g1551 Cco-Chr6:26066522 4.70E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0808 K01534 - csv:101221102 1392.87