Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0809 ATGATTTCCATAGCCCAAAATCCCAATGTCTCCTCCGAACTCTCCTCCTCTCTCCCGCCTTCCACCGCCACAACCCATACTTTCCGATCCAAATTTCCGGATATTACAATCCCCGACCACCTCCCTCTTCACAGTTACTGCTTTCAGAAGCTCTCTGAAGTTTCCCACCGCCCCTGTTTGATCGTCGGCTCCACTGGGAAATCCTATTCCTACTCCGACACCTACCTCTTCTCCCGGAAAGCCGCCGCCACTTTCTCTAAACTTGGAGTTAAGAAAGGCGATGTCATTATGATTCTTCTCCACAACTCTCCCGAATTTGTTTTCTCTTTTATGGCTTCCTCCATGCTCGGCGCCGTCGCCACCACCGCAAATCCGTACTACACGGCGGCGGAGATTTCCAAGCAGTTGAAGGCCTCCGGTGCCAAATTCGTGGTTACTTACTCCCAATGTGTCGACAAGCTCAAAGAATCCAGCGAACATCTCACCATTGTCACCGTCGATGACCCGCCAGAGAATTGTCTGAGCTTCTCGATGGTGTACGACGCCGATGTGAATGACGTCCCCTCCGTGGAGATTGACACAAACGACGCCGTTTCGCTACCGTTCTCCTCTGGCACGACCGGGCTCCCGAAGGGTGTGATTTTGACTCATAAGAACATGGTGTCGAGTGTGGCTCAACAGGTGGATGGAGAGAATCCAAACTTGTATTTAAGAAGAAACGACGTAGTGTTATGCGTGTTACCAATGTTCCACATATTCTCGTTGAGCAGCATAGTTTTGATATCAATTAGGTCAGGGGCAGCGCTGCTTTTGATGGAGAAGTTCGAGATAGAGTCATTGCTAAGACTAATAGAGAGGCACGAGGTGACAGTGGCGGCGGTGGTGCCGCCGCTTGTGGTAGCGCTAGTGAAGAACCCGAGGGTGGCGGATTTTGACCTGAGCTCGATTAGATTGGTCCTTTCCGGAGCGGCGCCGCTGCGGAAGGAGCTGGAGGAGGCTCTCATGGAGAGGCTTCCTCAAGCCATTTTTGGTCAGGGTTATGGGATGACGGAAGCGGGTCCCGTGCTGAGCATGTGCTCGGCTTTTGCAAAGGAGCCACTGATGCCAACAAAATCAGGTTCCTGTGGCAGAGTAGTGAGAAACTCGGAGCTCAAAGTCATTGACCCACAAACCGGCGACTCCCTCACTTATAATCAACCTGGAGAGATTTGTGTTCGAGGTCCTCAAGTAATGAAAGGATATTTGAACGACCCGGTGTCCACGTCCTTGACTGTCGACGTGGAGGGTTGGCTTCATACGGGTGACATTGGTTACATTGACGATGAAGATGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGTTTTCAGGTGGCACCAGCAGAGTTAGAGGCCCTTCTTGTAACCCATCCATCTATTGTGGATGCCGCTGTTGTCCCGCAAAATGATGATGTTGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCCATCAACTCAGGATGAACTTACTGAGGACGCAGTAAAAGAATTCATAGCAAAGCAGGTTGTGTTCTACAAGAGATTGCAGAAAGTGTATTTTGTGCAAACAATTCCAAAATCACCCTCTGGAAAGATTTTGAGAAAGGAACTCAAAGCCAAGCTCTCAGTGTCACCTGCATTTTAG 1674 49.4 MISIAQNPNVSSELSSSLPPSTATTHTFRSKFPDITIPDHLPLHSYCFQKLSEVSHRPCLIVGSTGKSYSYSDTYLFSRKAAATFSKLGVKKGDVIMILLHNSPEFVFSFMASSMLGAVATTANPYYTAAEISKQLKASGAKFVVTYSQCVDKLKESSEHLTIVTVDDPPENCLSFSMVYDADVNDVPSVEIDTNDAVSLPFSSGTTGLPKGVILTHKNMVSSVAQQVDGENPNLYLRRNDVVLCVLPMFHIFSLSSIVLISIRSGAALLLMEKFEIESLLRLIERHEVTVAAVVPPLVVALVKNPRVADFDLSSIRLVLSGAAPLRKELEEALMERLPQAIFGQGYGMTEAGPVLSMCSAFAKEPLMPTKSGSCGRVVRNSELKVIDPQTGDSLTYNQPGEICVRGPQVMKGYLNDPVSTSLTVDVEGWLHTGDIGYIDDEDEIFIVDRVKEIIKFKGFQVAPAELEALLVTHPSIVDAAVVPQNDDVAGEVPVAFVVPSTQDELTEDAVKEFIAKQVVFYKRLQKVYFVQTIPKSPSGKILRKELKAKLSVSPAF 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9044451 9051756 + CcPI632755_02g008090.1 Cco02g0809 171566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0809 557 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cco02g0809 557 Gene3D - 21 451 IPR042099 -
Cco02g0809 557 MobiDBLite consensus disorder prediction 1 22 - -
Cco02g0809 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 29 452 - -
Cco02g0809 557 Gene3D - 452 553 IPR045851 -
Cco02g0809 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 548 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Cco02g0809 557 Pfam AMP-binding enzyme 56 415 IPR000873 -
Cco02g0809 557 CDD 4CL 37 547 - -
Cco02g0809 557 SUPERFAMILY Acetyl-CoA synthetase-like 16 550 - -
Cco02g0809 557 FunFam 4-coumarate--CoA ligase 2 453 554 - -
Cco02g0809 557 Pfam AMP-binding enzyme C-terminal domain 466 541 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0809 Cco-Chr2:9044451 Cco10g1266 Cco-Chr10:25399980 6.20E-189 dispersed
Cco02g0809 Cco-Chr2:9044451 Cco11g1304 Cco-Chr11:25655547 3.60E-181 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0809 K01904 - csv:101221344 926.391