Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0860 ATGGCGGTGGAGCTTCTCACAGCCTTCACCAACGCTCAACTCTCTTCTCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCACTCTCACCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCTAACGCCGCTGTCTCCCACTTCCGAAAGGCCATTTCTCTCCTTGGCCGCTCCTCTAGAACCGGCCACGCCCGATTCCGCCGTGCCCCTTTGGATTCCTCTAAAATTTACAACGCTACGCCTATTCAACAAATTCCTCCGCCCCTCGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCCGCTGCTCCTAGTTCCTCCTTCTTAACCTCGCTTCCTGGTTCCGACTCTGAAATTAAGCTCCAACATCAACCTTCTTCCTCCTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTAGGCTCAGGGAAGTGCGCTGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAGAGAAAAATGAGGTTGAAAAGGGTAGTGAGAGTACCAGCTATAAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCGTGGAGGAAGTACGGGCAAAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCATGTTGAGAGAGCCTCAGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA 870 48.85 MAVELLTAFTNAQLSSPMDQDSAVQEAASGLDTLKKLITLLSHSHPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLDSATTINFSYSAAPSSSFLTSLPGSDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10025138 10026495 - CcPI632755_02g008600.1 Cco02g0860 171617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0860 289 SMART WRKY_cls 216 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0860 289 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0860 289 Pfam Plant zinc cluster domain 168 214 IPR018872 -
Cco02g0860 289 Pfam WRKY DNA -binding domain 218 274 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0860 289 SUPERFAMILY WRKY DNA-binding domain 212 276 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0860 289 Gene3D WRKY domain 200 277 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g0860 289 FunFam WRKY transcription factor 65 200 277 - -
Cco02g0860 289 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 279 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0860 Cco-Chr2:10025138 Cco04g1457 Cco-Chr4:30010269 4.80E-84 dispersed
Cco08g0427 Cco-Chr8:10021104 Cco02g0860 Cco-Chr2:10025138 3.60E-14 transposed
Cco02g0860 Cco-Chr2:10025138 Cco05g2915 Cco-Chr5:36685428 4.40E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58739 PF03106 WRKY 2.50E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0860 - - - 0.0