Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g0860 | ATGGCGGTGGAGCTTCTCACAGCCTTCACCAACGCTCAACTCTCTTCTCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCATCACATTACTCTCTCACTCTCACCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCTAACGCCGCTGTCTCCCACTTCCGAAAGGCCATTTCTCTCCTTGGCCGCTCCTCTAGAACCGGCCACGCCCGATTCCGCCGTGCCCCTTTGGATTCCTCTAAAATTTACAACGCTACGCCTATTCAACAAATTCCTCCGCCCCTCGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCCGCTGCTCCTAGTTCCTCCTTCTTAACCTCGCTTCCTGGTTCCGACTCTGAAATTAAGCTCCAACATCAACCTTCTTCCTCCTCTTTTCAGATTACTGATCTTTCCAGAGTTTCGTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTAGGCTCAGGGAAGTGCGCTGGATCTTCTGGTGGTCGTTGCCACTGCTCTAAGAAGAGAAAAATGAGGTTGAAAAGGGTAGTGAGAGTACCAGCTATAAGCTCAAAGAACGCTGATATTCCTCCTGATGATTATTCGTGGAGGAAGTACGGGCAAAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTAAGAGGATGTCCAGCAAGAAAGCATGTTGAGAGAGCCTCAGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGATCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA | 870 | 48.85 | MAVELLTAFTNAQLSSPMDQDSAVQEAASGLDTLKKLITLLSHSHPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPLDRLDSATTINFSYSAAPSSSFLTSLPGSDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10025138 | 10026495 | - | CcPI632755_02g008600.1 | Cco02g0860 | 171617 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g0860 | 289 | SMART | WRKY_cls | 216 | 276 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0860 | 289 | ProSiteProfiles | WRKY domain profile. | 211 | 277 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0860 | 289 | Pfam | Plant zinc cluster domain | 168 | 214 | IPR018872 | - | |
Cco02g0860 | 289 | Pfam | WRKY DNA -binding domain | 218 | 274 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0860 | 289 | SUPERFAMILY | WRKY DNA-binding domain | 212 | 276 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0860 | 289 | Gene3D | WRKY domain | 200 | 277 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g0860 | 289 | FunFam | WRKY transcription factor 65 | 200 | 277 | - | - | |
Cco02g0860 | 289 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 24 | 279 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0860 | Cco-Chr2:10025138 | Cco04g1457 | Cco-Chr4:30010269 | 4.80E-84 | dispersed | |
Cco08g0427 | Cco-Chr8:10021104 | Cco02g0860 | Cco-Chr2:10025138 | 3.60E-14 | transposed | |
Cco02g0860 | Cco-Chr2:10025138 | Cco05g2915 | Cco-Chr5:36685428 | 4.40E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58739 | PF03106 | WRKY | 2.50E-26 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g0860 | - | - | - | 0.0 |