Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0864 ATGACCTTCATTCTTCTTCTTCTTCTTCTTCTTCTTCAATCTTCTTGCAATGGACTCAATTTCGATGGGATTCTCTTGCTTTCCTTTAAGTATGCCGTTTTGGATGATCCTCTCTTTGTTCTTCAGAATTGGAATTACTCCGACGACACCCCCTGTTCATGGCGAGGAGTCGTATGTTCCGCCGATGGTTCCGGTGGCTCTAGAGTTACAGGTTTGTCTCTTCCGAGTTCTCAGCTTATGGGCTCTGTTTCTTCTGATTTGGGTCTGATTCAAAATCTTCAATCGGTTGATCTTTCTAACAATTCCTTTAATGGGTCTCTTCCCCGGTCTCTGTTCAACGCCACCATGCTCCGGTTTCTTGATTTGTCCGATAATTTGATTTCCGGCGAGGTTCCTGGGCCAGAGGGTGACCTTAGGAATCTTCAAGTTCTTAACCTTTCCGGTAATGCTCTGTTCGGGAAGTTTCCGAATGATCTCGTGAATTTGAGTAATCTCACGGTTGTGTCTCTGAAGAACAATTACATTTCCGGTGAAATTCCCGGTGGGTTTAAAACGGTGGAGGTTTTGGATCTGTCTTCCAATTTGATTAATGGGTCTTTGCCGTCTGATTTTGGTGGCGACAGTTTACGTTACTTTAACATCTCATACAACAGACTTTCCGGCGAAATTCCGCCGGATTTCGCCCACAAAATTCCGGCTAATGCCATAATTGATCTCTCCTTCAACAACCTCACCGGAGAAGTCCCTGTTTCCGACGTGTTCATGAACCAAGAAGCAAACTCCTTCACCGGAAACCGCCAACTCTGCGGTGAGTTAACGAAAACCCCATGCCCAATTACGTCATCGCCATCGTCTCTCCCACCGGCCATCGCCGCCATTCCGCTAGACCCAAGTACTCCGGAAACGACCTCGCCGGAAAAGCAGAGCGAAACAGGGTTTAAACCGTCCACAATCGTGGCCATTGTACTGGGAGACGTCGTCGGATTGGCAATTCTGTGCCTCCTTTTCTTCTACGTTTTCCATTTGAAGAAAAAAAACAAAGCCGTCGAAACCCATTTGAAAAACGAACCCAATTTAGCCAAAGACAGTTGGTCCACATCCTCATCGGAATCCAGAGGATTTTCACGATGGTCCTGCCTCAGAAAAACAGGGGATCCAGAAGAGGCAAATTCCGATCAAGCGAGTGTGTTATCCTTCTCCGGCCATCGCGAGACGGCGGAGGAGGGTGCAGAAGAGAACAAGAGAGGAACATTAGTGACAGTAGACGGCGGAGAGAAGGAGCTGGAACTCGATACTCTACTGAAGGCATCGGCGTACATTCTGGGCGCCACCGGATCGAGCATAACGTACAAGGCGGTGCTGGAAGACGGCACGGCGTTTGCAGTGAGGAGAATCGGAGACGGAGGAGTGGAAAAATATAAAGATTTCGAGAATCAGATTCGTGCTGTAGCTAAATTGGTTCACCCAAATTTGGTTCGTGTTCGTGGATTTTATTGGGGTGTTGATGAAAAGCTCATTATTTATGATTTTGTTCCTAATGGTAGCCTTGCCAATGCTCGTTACAGGAAAATGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTGAGAATTGCAAAAGGAGTGGCCCGTGGCCTTTCTTATCTCCACGACAAGAAGCATGTCCATGGCAACTTAAGGCCCACCAACATTCTTCTCGGCTTCGATATGGAGCCCAAGATAGGCGATTTCGGCCTTGACAAGCTCTTCTTGGGTGACTCCAGCTATAAACCCGGTGGCTCCACTCGAAATTTCGGGAGTAAAAGGTCTACAGCGTCTCGGGATAGCTTCCAAGATTTTGTCACCGGACCGAGCCCTGGACCGAGCCCGAGCTCGATCAGTGGGGTGTCGCCGTATTTAGCACCGGAGTCGCTTCGGAGCTTGAAGCCCAACTTGAAATGGGATGTCTACTCTTTTGGTGTGATATTGCTTGAGTTACTAACCGGAAAGATTGTAGTGTTGGATGAGTTGGGGCAAGGGCTTGGGCTTGCCAGCGAGGACAAGAGTCGAACCTTAAGAATGGCTGACATGGCGATTCGAGCAGACGTGGAAGGTAGAGAAGAAGCATTGTTGTCTTGCTTTAAATTAGGATATAGTTGTGCATCTCCTGCCCCACAAAAGAGACCATCCATGAAAGAAGCCTTGCAAGTTTTGGAGAAATTTCCAACCATATCAATGTCATCACACTATTATGGTCTCTAG 2244 47.86 MTFILLLLLLLLQSSCNGLNFDGILLLSFKYAVLDDPLFVLQNWNYSDDTPCSWRGVVCSADGSGGSRVTGLSLPSSQLMGSVSSDLGLIQNLQSVDLSNNSFNGSLPRSLFNATMLRFLDLSDNLISGEVPGPEGDLRNLQVLNLSGNALFGKFPNDLVNLSNLTVVSLKNNYISGEIPGGFKTVEVLDLSSNLINGSLPSDFGGDSLRYFNISYNRLSGEIPPDFAHKIPANAIIDLSFNNLTGEVPVSDVFMNQEANSFTGNRQLCGELTKTPCPITSSPSSLPPAIAAIPLDPSTPETTSPEKQSETGFKPSTIVAIVLGDVVGLAILCLLFFYVFHLKKKNKAVETHLKNEPNLAKDSWSTSSSESRGFSRWSCLRKTGDPEEANSDQASVLSFSGHRETAEEGAEENKRGTLVTVDGGEKELELDTLLKASAYILGATGSSITYKAVLEDGTAFAVRRIGDGGVEKYKDFENQIRAVAKLVHPNLVRVRGFYWGVDEKLIIYDFVPNGSLANARYRKMGSSPCHLPWEARLRIAKGVARGLSYLHDKKHVHGNLRPTNILLGFDMEPKIGDFGLDKLFLGDSSYKPGGSTRNFGSKRSTASRDSFQDFVTGPSPGPSPSSISGVSPYLAPESLRSLKPNLKWDVYSFGVILLELLTGKIVVLDELGQGLGLASEDKSRTLRMADMAIRADVEGREEALLSCFKLGYSCASPAPQKRPSMKEALQVLEKFPTISMSSHYYGL 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10155281 10157971 - CcPI632755_02g008640.1 Cco02g0864 171621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0864 747 MobiDBLite consensus disorder prediction 297 311 - -
Cco02g0864 747 PANTHER OS05G0588300 PROTEIN 137 735 IPR050994 -
Cco02g0864 747 Pfam Leucine Rich repeats (2 copies) 116 151 IPR025875 -
Cco02g0864 747 Gene3D Transferase(Phosphotransferase) domain 1 511 743 - -
Cco02g0864 747 FunFam Leucine-rich repeat receptor-like protein kinase 185 279 - -
Cco02g0864 747 Pfam Protein kinase domain 441 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0864 747 SUPERFAMILY Protein kinase-like (PK-like) 440 733 IPR011009 -
Cco02g0864 747 SUPERFAMILY L domain-like 28 270 - -
Cco02g0864 747 CDD STKc_IRAK 441 735 - -
Cco02g0864 747 Gene3D Phosphorylase Kinase; domain 1 404 510 - -
Cco02g0864 747 FunFam Leucine-rich repeat receptor-like protein kinase 19 181 - -
Cco02g0864 747 Pfam Leucine Rich Repeat 208 228 IPR001611 GO:0005515(InterPro)
Cco02g0864 747 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Cco02g0864 747 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515(InterPro)
Cco02g0864 747 Pfam Leucine Rich Repeat 164 184 IPR001611 GO:0005515(InterPro)
Cco02g0864 747 MobiDBLite consensus disorder prediction 610 630 - -
Cco02g0864 747 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Cco02g0864 747 Gene3D Ribonuclease Inhibitor 184 279 IPR032675 -
Cco02g0864 747 ProSiteProfiles Protein kinase domain profile. 435 738 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g0864 747 Pfam Leucine rich repeat N-terminal domain 20 60 IPR013210 -
Cco02g0864 747 MobiDBLite consensus disorder prediction 381 414 - -
Cco02g0864 747 MobiDBLite consensus disorder prediction 290 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0864 Cco-Chr2:10155281 Cco05g2510 Cco-Chr5:33458521 2.30E-77 dispersed
Cco01g0741 Cco-Chr1:7848637 Cco02g0864 Cco-Chr2:10155281 7.80E-11 transposed
Cco05g1191 Cco-Chr5:11064289 Cco02g0864 Cco-Chr2:10155281 1.60E-147 transposed
Cco02g0864 Cco-Chr2:10155281 Cco05g2904 Cco-Chr5:36575491 2.30E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86562 PF00069 Pkinase 1.50E-28 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0864 - - - 0.0