Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0871 ATGGGAACCCTTTCCTTCCCAATTGCGTCCTCAAAATCCCGACTCTTATCGACTCCGAATCCAATTGCATTTTCTATCCGTTTTCTTCAAACATCTTTCCCTTCTTCTGCAATTCGCCTTCGTAATTCTCCCATTCTCCATCTACGGCGACGTGTTCTCTGTTCTGCTGCAGAAACTGGTCGTTCGAATCACGATGACCACCACCATATTCATGATCACCAGCACCACCAGCACCAGCACCAGCACCAGCACCAGCACCACCAGCACCACCACCACCACCATGGTCATCACCATTGTGATCATGGTGTGGAGCTGTCTGGGCCTCAGAAAGCGGTGATTGGATTTGCTAAAGCCATTAGGTGGACAGACTTGGCTAGCTATCTCAGGGAACACTTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTAGCTGCTGCTGTTTCCCCATATTTGGTGCCGAAGCTCATTGCAAAGCCTTTGCAAAATGCTTTCATTGTCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATACACTTATGGCTCTTGCAGCCTTTGCTTCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTGTCTCACATTGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTTAAAGAGTTGAAGGAAAACTATCCAGACTCTGCCCTTGTTTTAGATACAAATGATGGTAAACTTCCAAATATTACAGATTTATCCTACCAAAAGGTGCCTGTCCATGATATAGAGGTGGACTCCTATATATTGGTTGGAGCTGGTGAGTTTGTGCCTATAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTGGAGATTACGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTTTGAGTCGTATAGTGAACTTGACTGAAGAAGCACAACTGAATAAGCCAAGACTTCAGAGGTGGCTTGATGAATTTGGTGAGCATTATAGCAAAGCAGTTGTAGTATTGGCCATTGCTATTGCCCTCGTTGGTCCAATATTATTCAATTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCAGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGGGGGCTCATTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTTGGAGAAAACAAATCAGACTTTGCTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCCATGGAGAAGGGTACTACTCACCCCATTGGAAGAGCTGTGGTCGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAGAATTTGGAATATTTTCCGGGTAGAGGACTTGTTGCAACTCTGCATGGTACTGAGTCGGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTTGGGTCCTTAGATTTCATCACTTCATGCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCGAGCACATCTTCATATGGAAGTGAGTTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATAGCTGAATTAACAGATAGAGCTAAACTTCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGGAGAGTGGCAAACGCAGTGGGCATCGAGGAAGTCCACTTCAGTCTAAAGCCTGAAGACAAGCTTAGTCACGTCAAAAGTATCTCTAGGGAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGCATTAATGATGCACCAGCCCTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACAGCTATAGCTGTGGCTGATGTTCTGTTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCTTTGTTTTCAATATTTGTGGCCTCTCTTCCTGCAGTTCTAGGGTTTCTTCCCTTGTGGTTAACGGTACTTCTGCACGAAGGTGGTACTCTTCTCGTTTGCCTCAATTCCATACGTGCTCTGAATAATCCTAGTTGGTCCTGGAAGCAGGACTTGAAGCAATTGCTAATGGAGCTGAAATTTAAAGACTCGCAGCCTAGCCATAATACCAGCTCTACTACTCTACAATCTGCCCCTGTATAG 2493 44.77 MGTLSFPIASSKSRLLSTPNPIAFSIRFLQTSFPSSAIRLRNSPILHLRRRVLCSAAETGRSNHDDHHHIHDHQHHQHQHQHQHQHHQHHHHHHGHHHCDHGVELSGPQKAVIGFAKAIRWTDLASYLREHLQLCCCSMALFVAAAVSPYLVPKLIAKPLQNAFIVIAFPLVGVSSSLDALTDISGGKVNIHTLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDSALVLDTNDGKLPNITDLSYQKVPVHDIEVDSYILVGAGEFVPIDCEVFQGSATVTIEHLTGEIKPLEITVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLAIAIALVGPILFNWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHEVGENKSDFASCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLHGTESGTEGGKLLKASLGSLDFITSCYKSETKSKEIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSVIAELTDRAKLHVMMLTGDHESSARRVANAVGIEEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFSIFVASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWKQDLKQLLMELKFKDSQPSHNTSSTTLQSAPV 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10357040 10383587 - CcPI632755_02g008710.1 Cco02g0871 171628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0871 830 MobiDBLite consensus disorder prediction 73 98 - -
Cco02g0871 830 CDD P-type_ATPase_HM 135 789 - -
Cco02g0871 830 Gene3D - 229 355 - -
Cco02g0871 830 NCBIfam HAD-IC family P-type ATPase 593 767 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g0871 830 NCBIfam HAD-IC family P-type ATPase 264 480 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g0871 830 NCBIfam heavy metal translocating P-type ATPase 191 789 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cco02g0871 830 Pfam E1-E2 ATPase 261 437 - -
Cco02g0871 830 SFLD p-type atpase 439 740 IPR044492 -
Cco02g0871 830 SUPERFAMILY Calcium ATPase, transduction domain A 261 350 IPR008250 -
Cco02g0871 830 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 57 822 IPR051949 -
Cco02g0871 830 Pfam haloacid dehalogenase-like hydrolase 455 700 - -
Cco02g0871 830 Gene3D - 450 738 IPR023214 -
Cco02g0871 830 SUPERFAMILY Calcium ATPase, transmembrane domain M 194 770 IPR023298 -
Cco02g0871 830 SUPERFAMILY HAD-like 455 787 IPR036412 -
Cco02g0871 830 SFLD C1.7: P-type atpase like 439 740 - -
Cco02g0871 830 Gene3D - 468 618 IPR023299 GO:0000166(InterPro)
Cco02g0871 830 PRINTS P-type cation-transporting ATPase superfamily signature 711 723 - -
Cco02g0871 830 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Cco02g0871 830 PRINTS P-type cation-transporting ATPase superfamily signature 633 643 - -
Cco02g0871 830 PRINTS P-type cation-transporting ATPase superfamily signature 687 706 - -
Cco02g0871 830 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Cco02g0871 830 MobiDBLite consensus disorder prediction 59 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0808 Cco-Chr2:9012068 Cco02g0871 Cco-Chr2:10357040 4.0e-314 dispersed
Cco02g0871 Cco-Chr2:10357040 Cco05g1803 Cco-Chr5:26773332 1.40E-48 dispersed
Cco11g1233 Cco-Chr11:24483315 Cco02g0871 Cco-Chr2:10357040 1.30E-08 dispersed
Cco02g0871 Cco-Chr2:10357040 Cco06g1551 Cco-Chr6:26066522 1.20E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0871 K01534 - mdm:103453726 1132.09