Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0878 ATGGATTCTCTCTCGGCTCTCCTTCTACTCTTTCTTGCTTTCCTTTTTCTGCGGCAACTCAGAACCCGCCGGAGAAATCTACCGCCGAGCCCACCGTCAGTTCCGATTATTGGCCATCTTCACCTCCTAAAACGCCCAACCCACCGGAACTTCCAAAACATCGCCGCCAAATACGGACCCATTTTCACTCTCCGATTCGGATCTCGCCTTGCCCTTATAGTCTCTTCACTCCAAATAGCCCAAGAATGCTTCACCAAAAACGACCTCATTTTCGCCAACCGCCCGCGTATGCTCTCCGGAAAATACCTCGGCTACGACTGCACCACCATGGCCACCGCCTCTTACGGCGACCACTGGCGAAACCTCCGCCGCCTCGCCGCCATGGAGATCTTCTCCTCGACGCGCCTCAACGCCTCTCTCGGCATCCGGAAGGATGAAATCCGGCGATTGTTGGTTAAACTCCATTCGGAATCGTTCACTAAGGCGGAGGCGAGGGAGTTCAGAGAACTTATGGAAGAGGTTTCACGTCATGGAGGAACTACGCAATGGGTGGATTTCATGCCGATTTTGAAATGGATTGGGTTTGATGGATATGAGAAGAGTTTGGCCAAATCGGCGATAAGGGCCGATCGATTCGTGCAGGAATTGGTTGAAGAACGACGGAATAAGAAAGTATTGGGAAGAGAAGAACAGAGTTGCCTGCTTCATCGGCTTCTGGAATTGCAGCTTTCTGAACCCGAATATTACAGTGATGAGATCATCAAAGGGATCATTCTGGTTTTGTTGCGTGCAGGAACAGATACGTCATCTGTGAGCTTGGACTGGATAATGACTCAACTACTGAACCATCCAGAGGTATTAGCGAAAGCCAAAGCTGAAATAGACACCAAGATTGGCCAAGATCGACCCCTTGAGGAAACAGATATCGCCAACCTTGCCTACCTTCAAGCCATTATTTCTGAAACCTTTCGATTGCACCCTCCAGCCCCAATGCTCCTCACACACTATTCTTCCCACGACTGCACTGTCGCAGGCTACAACATTCCACGTGGCACAATGTTGTTGGTCAATGCTTGGGCAATTCACAGAGACCCCAAGCTGTGGGACGACCCGACGAGCTTCCGACCGGAGAGATTCTTGGGGACAGGGAATGAGCTGCAAGCCAACAAACTCATTCCTTTCGGAGTTGGAAGGAGGGCTTGCCCTGGGGAAACTATGGGTTTACGTGTTATAGGACTGACTTTAGGTCTACTGATTCAGTGCTACGAGTGGAAAAAGGTTGGATATGAAAATGTAGACATGACTGAAGGTGGAGGTATCACCATTCTCAAACTGAAGCCTTTGGAAACCATGTGCAAAGCTAGACCAATTATGGATAAAGTTTTATCAAATGGTTTGGACTAA 1404 49.36 MDSLSALLLLFLAFLFLRQLRTRRRNLPPSPPSVPIIGHLHLLKRPTHRNFQNIAAKYGPIFTLRFGSRLALIVSSLQIAQECFTKNDLIFANRPRMLSGKYLGYDCTTMATASYGDHWRNLRRLAAMEIFSSTRLNASLGIRKDEIRRLLVKLHSESFTKAEAREFRELMEEVSRHGGTTQWVDFMPILKWIGFDGYEKSLAKSAIRADRFVQELVEERRNKKVLGREEQSCLLHRLLELQLSEPEYYSDEIIKGIILVLLRAGTDTSSVSLDWIMTQLLNHPEVLAKAKAEIDTKIGQDRPLEETDIANLAYLQAIISETFRLHPPAPMLLTHYSSHDCTVAGYNIPRGTMLLVNAWAIHRDPKLWDDPTSFRPERFLGTGNELQANKLIPFGVGRRACPGETMGLRVIGLTLGLLIQCYEWKKVGYENVDMTEGGGITILKLKPLETMCKARPIMDKVLSNGLD 467
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 10491878 10495965 - CcPI632755_02g008780.1 Cco02g0878 171635
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0878 467 FunFam Cytochrome P450 82C4 155 453 - -
Cco02g0878 467 Gene3D Cytochrome P450 14 455 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 394 403 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco02g0878 467 CDD CYP81 59 448 - -
Cco02g0878 467 Pfam Cytochrome P450 162 438 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 Pfam Cytochrome P450 28 158 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS P450 superfamily signature 392 401 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS P450 superfamily signature 264 281 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS P450 superfamily signature 317 328 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PANTHER CYTOCHROME P450 82C3-RELATED 9 455 IPR050651 -
Cco02g0878 467 SUPERFAMILY Cytochrome P450 28 455 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 79 100 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 55 74 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 401 424 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 253 270 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 273 299 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 316 334 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 357 381 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0878 467 PRINTS E-class P450 group I signature 391 401 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0878 Cco-Chr2:10491878 Cco04g1470 Cco-Chr4:30145027 4.90E-139 dispersed
Cco02g0878 Cco-Chr2:10491878 Cco02g0879 Cco-Chr2:10508197 2.00E-217 tandem
Cco02g0878 Cco-Chr2:10491878 Cco05g2865 Cco-Chr5:36271161 8.90E-64 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0878 K13260 - csv:101210967 776.933