Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0878 | ATGGATTCTCTCTCGGCTCTCCTTCTACTCTTTCTTGCTTTCCTTTTTCTGCGGCAACTCAGAACCCGCCGGAGAAATCTACCGCCGAGCCCACCGTCAGTTCCGATTATTGGCCATCTTCACCTCCTAAAACGCCCAACCCACCGGAACTTCCAAAACATCGCCGCCAAATACGGACCCATTTTCACTCTCCGATTCGGATCTCGCCTTGCCCTTATAGTCTCTTCACTCCAAATAGCCCAAGAATGCTTCACCAAAAACGACCTCATTTTCGCCAACCGCCCGCGTATGCTCTCCGGAAAATACCTCGGCTACGACTGCACCACCATGGCCACCGCCTCTTACGGCGACCACTGGCGAAACCTCCGCCGCCTCGCCGCCATGGAGATCTTCTCCTCGACGCGCCTCAACGCCTCTCTCGGCATCCGGAAGGATGAAATCCGGCGATTGTTGGTTAAACTCCATTCGGAATCGTTCACTAAGGCGGAGGCGAGGGAGTTCAGAGAACTTATGGAAGAGGTTTCACGTCATGGAGGAACTACGCAATGGGTGGATTTCATGCCGATTTTGAAATGGATTGGGTTTGATGGATATGAGAAGAGTTTGGCCAAATCGGCGATAAGGGCCGATCGATTCGTGCAGGAATTGGTTGAAGAACGACGGAATAAGAAAGTATTGGGAAGAGAAGAACAGAGTTGCCTGCTTCATCGGCTTCTGGAATTGCAGCTTTCTGAACCCGAATATTACAGTGATGAGATCATCAAAGGGATCATTCTGGTTTTGTTGCGTGCAGGAACAGATACGTCATCTGTGAGCTTGGACTGGATAATGACTCAACTACTGAACCATCCAGAGGTATTAGCGAAAGCCAAAGCTGAAATAGACACCAAGATTGGCCAAGATCGACCCCTTGAGGAAACAGATATCGCCAACCTTGCCTACCTTCAAGCCATTATTTCTGAAACCTTTCGATTGCACCCTCCAGCCCCAATGCTCCTCACACACTATTCTTCCCACGACTGCACTGTCGCAGGCTACAACATTCCACGTGGCACAATGTTGTTGGTCAATGCTTGGGCAATTCACAGAGACCCCAAGCTGTGGGACGACCCGACGAGCTTCCGACCGGAGAGATTCTTGGGGACAGGGAATGAGCTGCAAGCCAACAAACTCATTCCTTTCGGAGTTGGAAGGAGGGCTTGCCCTGGGGAAACTATGGGTTTACGTGTTATAGGACTGACTTTAGGTCTACTGATTCAGTGCTACGAGTGGAAAAAGGTTGGATATGAAAATGTAGACATGACTGAAGGTGGAGGTATCACCATTCTCAAACTGAAGCCTTTGGAAACCATGTGCAAAGCTAGACCAATTATGGATAAAGTTTTATCAAATGGTTTGGACTAA | 1404 | 49.36 | MDSLSALLLLFLAFLFLRQLRTRRRNLPPSPPSVPIIGHLHLLKRPTHRNFQNIAAKYGPIFTLRFGSRLALIVSSLQIAQECFTKNDLIFANRPRMLSGKYLGYDCTTMATASYGDHWRNLRRLAAMEIFSSTRLNASLGIRKDEIRRLLVKLHSESFTKAEAREFRELMEEVSRHGGTTQWVDFMPILKWIGFDGYEKSLAKSAIRADRFVQELVEERRNKKVLGREEQSCLLHRLLELQLSEPEYYSDEIIKGIILVLLRAGTDTSSVSLDWIMTQLLNHPEVLAKAKAEIDTKIGQDRPLEETDIANLAYLQAIISETFRLHPPAPMLLTHYSSHDCTVAGYNIPRGTMLLVNAWAIHRDPKLWDDPTSFRPERFLGTGNELQANKLIPFGVGRRACPGETMGLRVIGLTLGLLIQCYEWKKVGYENVDMTEGGGITILKLKPLETMCKARPIMDKVLSNGLD | 467 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10491878 | 10495965 | - | CcPI632755_02g008780.1 | Cco02g0878 | 171635 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0878 | 467 | FunFam | Cytochrome P450 82C4 | 155 | 453 | - | - | |
| Cco02g0878 | 467 | Gene3D | Cytochrome P450 | 14 | 455 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 394 | 403 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0878 | 467 | CDD | CYP81 | 59 | 448 | - | - | |
| Cco02g0878 | 467 | Pfam | Cytochrome P450 | 162 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | Pfam | Cytochrome P450 | 28 | 158 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | P450 superfamily signature | 392 | 401 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | P450 superfamily signature | 264 | 281 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | P450 superfamily signature | 317 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PANTHER | CYTOCHROME P450 82C3-RELATED | 9 | 455 | IPR050651 | - | |
| Cco02g0878 | 467 | SUPERFAMILY | Cytochrome P450 | 28 | 455 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 79 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 55 | 74 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 401 | 424 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 253 | 270 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 273 | 299 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 316 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 357 | 381 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0878 | 467 | PRINTS | E-class P450 group I signature | 391 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0878 | Cco-Chr2:10491878 | Cco04g1470 | Cco-Chr4:30145027 | 4.90E-139 | dispersed | |
| Cco02g0878 | Cco-Chr2:10491878 | Cco02g0879 | Cco-Chr2:10508197 | 2.00E-217 | tandem | |
| Cco02g0878 | Cco-Chr2:10491878 | Cco05g2865 | Cco-Chr5:36271161 | 8.90E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0878 | K13260 | - | csv:101210967 | 776.933 |