Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0880 | ATGCTTTATCTCTGTCTCTCTCTTATCACATTCATATCAGTTTCCACATTTCTAGTGCGACCCTCCATAAACCTTCCCCCAAGTCCACCCTTTTCTCTCCCAATTATAGGCCATCTCTATCTCCTAAAACGCCCCATCCATCAAACCCTTCAAAAGCTTTCCAAGAAATATGGCCACGTCTTCTCTCTCCGCTTAGGCTCTCAACTCGTTGTCGTCGTTTCTTCTCCTTCCGCCGTCAAAGAATGCTTCACAGTGAATGATGTCATTCTTGCAAATCGGCCGCTGTCCAACATTACCAAGCACTTGACTTACAACAACACGATCTTCTCGGCGTCCCCTTATGGCGACTATTGGCGAGACCTCCGCCGAATCAGCATCATAGAGATTTTCTCAGCCACTCGCCTTAATATGTTTTTGGAGATTAGGAAAGACGAAATCAAACACCTACTTGGTAAGTTGTGTGGCATTTCAAGTGATGGTTTTGCGAGAGTTGAGATGGGATCTATATTTTCTGAGTTGTCGTCTAATATTGTGATGAGAATGGTTATGGGGAAGAGGTTTTATGGAGAGGATGTGATGGATGTAGAACAAGCAAGGGAATTTAGAGATATTGTGAAACAAGTCATGGAAAATTGTGGGACTTACAATTCAAGAAGTTTTATACCCTTGTTGAATTGGATTGACATAACTCGTTATGAGAAGAGGGTAATAAAACTAGGACAACGAAACGATCAATTTTTGCAAGGGTTGATTGATGAGCATAGGAATCAAAAGGAGGAAGGTAGAAATACTATGATTGATCATTTACTTTCCTTGCAAGAATCCCAACTTGATTTTATGAGTGATCAAGTTATCAAAGGTCTTATAATGGTAATATTACTTGCAGGCACCGACACAATAGCTGTGACTATGGAATGGGCACTGTCCCATTTGCTCAACAATCCTGATGTGCTAAACAATGCTAGGATTGAGTTGGACTCAATAATTGGACAAGAGCGATTGGTTGATGAATCTGATTTGTCGAAATTGAGTTATTTAGAAGGAGTAATCTATGAAACCTTACGATTAAATCCAGCAGCTCCTTTACTAGTGCCACATTATGCATCTAAAAATTGTTCAATAGCGGGCTACGAAATCCCCTGTGATACGATCGTCTTGATTAATGCTTGGGCAATACATAGAGATCCAAACATATGGGAAGATGCAACTACATTTAACCCCGAAAGACATAAGAACCCCAAGGTAGATGAGTTATTGTACAAACTAATACCTTTCGGTGTCGGGCGAAGAGCTTGCCCTGGTGTGGGAATGGCTCATCGTGTAGTTGGCTTCGCCTTGACATCATTGATTCAATGCTTTGAATGGAAGAGGGTGAATAATGAACTTGTGGACATGGCCGAGGGCGTTGGGCTCACAATGCCTAGAGCTCAACCATTGCAAGCCATGTGTAAATCCCGACCAATCATGAATAGGGTTCTCATTTAA | 1485 | 41.62 | MLYLCLSLITFISVSTFLVRPSINLPPSPPFSLPIIGHLYLLKRPIHQTLQKLSKKYGHVFSLRLGSQLVVVVSSPSAVKECFTVNDVILANRPLSNITKHLTYNNTIFSASPYGDYWRDLRRISIIEIFSATRLNMFLEIRKDEIKHLLGKLCGISSDGFARVEMGSIFSELSSNIVMRMVMGKRFYGEDVMDVEQAREFRDIVKQVMENCGTYNSRSFIPLLNWIDITRYEKRVIKLGQRNDQFLQGLIDEHRNQKEEGRNTMIDHLLSLQESQLDFMSDQVIKGLIMVILLAGTDTIAVTMEWALSHLLNNPDVLNNARIELDSIIGQERLVDESDLSKLSYLEGVIYETLRLNPAAPLLVPHYASKNCSIAGYEIPCDTIVLINAWAIHRDPNIWEDATTFNPERHKNPKVDELLYKLIPFGVGRRACPGVGMAHRVVGFALTSLIQCFEWKRVNNELVDMAEGVGLTMPRAQPLQAMCKSRPIMNRVLI | 494 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10544600 | 10547703 | - | CcPI632755_02g008800.1 | Cco02g0880 | 171637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 54 | 73 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 284 | 301 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 304 | 330 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 388 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 347 | 365 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 422 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 78 | 99 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 173 | 191 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | E-class P450 group I signature | 432 | 455 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | CDD | CYP81 | 58 | 479 | - | - | |
| Cco02g0880 | 494 | Gene3D | Cytochrome P450 | 18 | 489 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | Pfam | Cytochrome P450 | 27 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | P450 superfamily signature | 295 | 312 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | P450 superfamily signature | 423 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | PRINTS | P450 superfamily signature | 348 | 359 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0880 | 494 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 425 | 434 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0880 | 494 | FunFam | Cytochrome P450 family protein | 18 | 489 | - | - | |
| Cco02g0880 | 494 | PANTHER | CYTOCHROME P450 82C3-RELATED | 14 | 486 | IPR050651 | - | |
| Cco02g0880 | 494 | SUPERFAMILY | Cytochrome P450 | 26 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0880 | Cco-Chr2:10544600 | Cco02g0886 | Cco-Chr2:10652500 | 5.70E-170 | dispersed | |
| Cco02g0880 | Cco-Chr2:10544600 | Cco02g0882 | Cco-Chr2:10591389 | 1.90E-112 | proximal | |
| Cco02g0879 | Cco-Chr2:10508197 | Cco02g0880 | Cco-Chr2:10544600 | 1.50E-141 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0880 | K13260 | - | csv:105434396 | 605.905 |