Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g0882 ATGGATATTCTCTTCCTTTCCATTTCCTTCTCTATATTCTCTCTCCTTCTTGCCTTGAAGTTTCTTCTTCGACCTCATCGCCAAAACCTTCCACCAACCCCATTTTTCTGTCTTCCCATTATCGGTCATCTCCATCTCATCAAACATCCTATCCATAGAACCCTTCACAAACTCTCCAAAAAGTATGGAGATGTCTTCTCTCTCCAATTTGGTTCAAGACTCGTCGTAGTTGTATCATCCTCTTTTGTTGTTCAAGAATGTTTTACAAAGAACGATATCATTCTCGCAAATCGACCCTTGTTGGGCACTGGAAAGCACTTGGCATACAACCATACCACCATGGCTGTTGCCCCTTACGGTGATCACTGGAGAAACCTACGTCGAATCGGCGCTCTCGAGATTTTCTCGACGAGTCGAGTAAATCTATTTTTGGGAATTCGAGAGGAGGAAGTTAAAGGGTTGATGATCATATTAATAGCAGGAATTGACACAACCGCGGTAACCTTAGAATGGGCACTCTCTCATGTACTCAACAATTCGGATGTGTTGGAGAAAGCAAAAGGTGAGATAGACAGTGCCATTGGACAAGAGCGTCTAGTCAGTGAAGCTGATTTGTCAAGTTTGAACTATCTGCAAGGAATAATTTCCGAAACTCTTCGGTTGAACCCAGCAGCTCCTTTGCTTGTTCCTCATTGTGCTTCAGAAGATTGTAAAATTGGAGGCTATGATGTACCACGTGACACAATTGTATTGATTAATGCTTGGGCTATCCATAGAGATCCCAACCAATGGGAAGATGCCACAAATTTTAAGCCCGAAAGACATACGAATCCTATTGGAGTTGACTCATATAAATTATTACCATTTGGATTGGGGAGGAGAGCCTGTCCTGGAATAGGAATAGCTCAACGGATGGCTACCTTGACTTTGGCAAACATGATTCAATGCTTTGAGTGGGAAAGAGAAGGCAATTCATTGGTTGACATGAGTGAAGGTGAAGGGATTACTATGCCCAAAGCTCAACGATTGGTAGCCAAGTGCAAACCGCGTCCAATCATGAAAGCTATTTCTAGGGAAGAGTTTCATCACATTGTCTCAAAATAG 1104 42.57 MDILFLSISFSIFSLLLALKFLLRPHRQNLPPTPFFCLPIIGHLHLIKHPIHRTLHKLSKKYGDVFSLQFGSRLVVVVSSSFVVQECFTKNDIILANRPLLGTGKHLAYNHTTMAVAPYGDHWRNLRRIGALEIFSTSRVNLFLGIREEEVKGLMIILIAGIDTTAVTLEWALSHVLNNSDVLEKAKGEIDSAIGQERLVSEADLSSLNYLQGIISETLRLNPAAPLLVPHCASEDCKIGGYDVPRDTIVLINAWAIHRDPNQWEDATNFKPERHTNPIGVDSYKLLPFGLGRRACPGIGIAQRMATLTLANMIQCFEWEREGNSLVDMSEGEGITMPKAQRLVAKCKPRPIMKAISREEFHHIVSK 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10591389 10593661 - CcPI632755_02g008820.1 Cco02g0882 171639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g0882 367 Gene3D Cytochrome P450 23 150 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 Pfam Cytochrome P450 154 340 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 Pfam Cytochrome P450 32 142 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 PANTHER CYTOCHROME P450 82C3-RELATED 155 350 IPR050651 -
Cco02g0882 367 PRINTS P450 superfamily signature 160 177 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 PRINTS P450 superfamily signature 287 296 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 PRINTS P450 superfamily signature 213 224 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 SUPERFAMILY Cytochrome P450 29 350 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco02g0882 367 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 289 298 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco02g0882 367 Gene3D Cytochrome P450 151 355 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0882 Cco-Chr2:10591389 Cco02g0890 Cco-Chr2:10719186 4.70E-137 dispersed
Cco11g1169 Cco-Chr11:22792976 Cco02g0882 Cco-Chr2:10591389 2.50E-19 dispersed
Cco02g0880 Cco-Chr2:10544600 Cco02g0882 Cco-Chr2:10591389 1.90E-112 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g0882 K13260 - csv:101204413 366.311