Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g0886 | ATGGATGGCATTTTGGTTTACATTTTCCTGTTTATGATCTCTCTCCTTCTGGCCTTAAAACTTTTGCTAAGCCATGGCAAAAACCTTCCTCCAAGCCCATTTTTTCCCCTTCCATTAATAGGCCACCTCCATCTCCTCAAACATCCCATCCACCAAACTCTTCACAATCTCTCAAAAAAGTATGGTCATGTCTTTTCTCTTTGGTTTGGTTCTCGTCTTGTTGTCGTTGTATCATCTCCTTCCGCGGTCTGCGAATGCTTCACTAAAAATGACATCGTTCTTGCAAATCGACCATTTTTGAACACGGGAAAACACTTGACATATAACTTTACAGTACTAACCGTTGCCCCTTACGGAGAGCTTTGGCGTAGCCTTCGCCGCATTACTACTTGTGAGATTTTCTCGACAATTCGACTCAATTTGTTCTCAGGGATTCGACAAGATGAAGTGAAGCGTTTGTTGTGTAAATTGTGTAATGGCAATTTGGTTGAAGAATTATTAATTCCTACAGTTGTGGAGGTTGAGCCAATGTTGTTGGATTTTACTTCTAATATTGTCATGAGAATGGTTGCTGGAAAGAGGTATTTTGGAGATGATGTGTTGGATGAAGGACAAGCAGGGAGATTTAGCGATGTTGTAAAGCGTGTAATGATGTGTGCAGGAGCAACTAATCCTGGAGATTTTATACCTTTATGGAATTGGATTGATCCAACTGGTCTTCAGAAGAAGATAATGAAAGTTGGGGAGGAAGTTGATGCGATCTTTCAAGGTTTAATTGATGAGATTCGGAATCAACAAGAAGGTGGGAATACGATGATTCATCATTTACTTCACTTGCAGACCACTCAACCTGAATACTTCAGTGATCAAATCATCAAAGGCCTCATACATGTTATACTTTTAGCAGGAATCGATACAACAGCCGTGACATTAGAATGGGCACTCTCACACTTGCTCAACAATCCAGAGGTGATAAAGAAAGCGAGACTTGAAATAGAGTGTTGTACTGGACAAAAACGTCTAGTCAATGAAGAGGATTTGTCAAGTTTGAGTTATTTGCAAGGAATAATCTTAGAAACTTTGCGACTAACCCCAGCAGCCCCTCTGCTTGTGCCACATTGCGCATCCGAAGATTGCCAAATAGAAGGCTATGATATACCACGTGACACAATCATATTTGTTAATGCTTGGGCAATACATAGAGATCCAAATCTATGGGAAGATGTCACTAGTTTCAAGCCTGAAAGGCATGAAAATGCAGTTGAATTATCTGATTCATACAAACTATTACCATTTGGGTTGGGGAGGAGGGCATGCCCTGGTGTAGGAATGGCGCAACGTGTGGTTGGCTTGACATTGGCATCGTTGATTCAATGCTTTGATTGGGAAAGAATGAATGGCTCATTAGTTGATATGACTGAAGGCCAAGGGATCACTATGCGAAAAGCTCAACCTTTGGTAGCCAAGTGTAAACCACGCCCTATCATGAGAGCTCTTGTTAGTGAAGTTATTCACCCCATTTAA | 1524 | 41.08 | MDGILVYIFLFMISLLLALKLLLSHGKNLPPSPFFPLPLIGHLHLLKHPIHQTLHNLSKKYGHVFSLWFGSRLVVVVSSPSAVCECFTKNDIVLANRPFLNTGKHLTYNFTVLTVAPYGELWRSLRRITTCEIFSTIRLNLFSGIRQDEVKRLLCKLCNGNLVEELLIPTVVEVEPMLLDFTSNIVMRMVAGKRYFGDDVLDEGQAGRFSDVVKRVMMCAGATNPGDFIPLWNWIDPTGLQKKIMKVGEEVDAIFQGLIDEIRNQQEGGNTMIHHLLHLQTTQPEYFSDQIIKGLIHVILLAGIDTTAVTLEWALSHLLNNPEVIKKARLEIECCTGQKRLVNEEDLSSLSYLQGIILETLRLTPAAPLLVPHCASEDCQIEGYDIPRDTIIFVNAWAIHRDPNLWEDVTSFKPERHENAVELSDSYKLLPFGLGRRACPGVGMAQRVVGLTLASLIQCFDWERMNGSLVDMTEGQGITMRKAQPLVAKCKPRPIMRALVSEVIHPI | 507 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10652500 | 10654711 | + | CcPI632755_02g008860.1 | Cco02g0886 | 171643 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g0886 | 507 | CDD | CYP81 | 62 | 486 | - | - | |
| Cco02g0886 | 507 | FunFam | Cytochrome P450 family protein | 22 | 496 | - | - | |
| Cco02g0886 | 507 | SUPERFAMILY | Cytochrome P450 | 30 | 493 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | Gene3D | Cytochrome P450 | 20 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | P450 superfamily signature | 302 | 319 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 395 | 419 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 58 | 77 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 291 | 308 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 354 | 372 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 311 | 337 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco02g0886 | 507 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 432 | 441 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco02g0886 | 507 | PANTHER | CYTOCHROME P450 82C3-RELATED | 12 | 493 | IPR050651 | - | |
| Cco02g0886 | 507 | Pfam | Cytochrome P450 | 31 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0880 | Cco-Chr2:10544600 | Cco02g0886 | Cco-Chr2:10652500 | 5.70E-170 | dispersed | |
| Cco02g0886 | Cco-Chr2:10652500 | Cco02g0890 | Cco-Chr2:10719186 | 6.70E-190 | dispersed | |
| Cco02g0886 | Cco-Chr2:10652500 | Cco02g0889 | Cco-Chr2:10677110 | 7.90E-175 | proximal | |
| Cco02g0886 | Cco-Chr2:10652500 | Cco05g2862 | Cco-Chr5:36229401 | 2.60E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g0886 | K13260 | - | csv:105434396 | 850.121 |